Mercurial > repos > aaronpetkau > flash

annotate README_ASSEMBLY_STATS @ 0:44c401ebc424 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author aaronpetkau
date Sat, 04 Jul 2015 08:57:35 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
44c401ebc424 Uploaded
aaronpetkau
parents:
diff changeset
1 #Created 07/01/2011
44c401ebc424 Uploaded
aaronpetkau
parents:
diff changeset
2 #Konrad Paszkiewicz, University of Exeter
44c401ebc424 Uploaded
aaronpetkau
parents:
diff changeset
3
44c401ebc424 Uploaded
aaronpetkau
parents:
diff changeset
4 Assembly stats
44c401ebc424 Uploaded
aaronpetkau
parents:
diff changeset
5
44c401ebc424 Uploaded
aaronpetkau
parents:
diff changeset
6 This series of scripts calculates various metrics on an input FASTA file. Typically this is most useful on either denovo genomic or transcriptomic data.
44c401ebc424 Uploaded
aaronpetkau
parents:
diff changeset
7
44c401ebc424 Uploaded
aaronpetkau
parents:
diff changeset
8 Prerequisites:
44c401ebc424 Uploaded
aaronpetkau
parents:
diff changeset
9
44c401ebc424 Uploaded
aaronpetkau
parents:
diff changeset
10 1. The bundled perl script fasta_summary.pl
44c401ebc424 Uploaded
aaronpetkau
parents:
diff changeset
11
44c401ebc424 Uploaded
aaronpetkau
parents:
diff changeset
12 Limitations:
44c401ebc424 Uploaded
aaronpetkau
parents:
diff changeset
13
44c401ebc424 Uploaded
aaronpetkau
parents:
diff changeset
14 Ideally this should output a composite dataset of some sort