Mercurial > repos > abaizan > kodoja

view test-data/testData_1.fasta @ 3:d4111d1de76f draft default tip

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v0.0.8, expose kodoja_VRL.tsv output
author peterjc
date Fri, 14 Sep 2018 09:55:56 -0400
parents 18fe33eb7775
children
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>SRR3466597.2160184/1
TTGAGTTTCACGGGAAACTGAGTTGTGAATTCAACTTCTCTACCTGGTGGTGTGGCTGACACTTTGAGGACTTTTCCTTCAAATTCATGTTCAAACAG
>SRR3466597.1867187/1
TCTATAATGTGGCTTCACGTTGCCTCGGCTGATTTGGTTGTTCCACCATTGCTTAAAAGTGACTCCAGGAAGGCTCGTCTTG
>SRR3466597.1714296/1
TCCCTTCAGGAGTTCCAAGTGGAACTTGAAAAGCGATTTCACAGACAAGTCTATATGTCCGCCGCAATCTACGGTGTTTTTCATGATTAAAGGCTTTCGC
>SRR3466597.979054/1
CCGACCGCGTACAATGAACATACCATGTCGATACCAATGCGCAGGTCCGTACGAGCCTTGCCTCAAAACTAGGCCACTTGAACCAAAAGTGAGCTTCGAT
>SRR3466597.1842453/1
GTGAAATTCGATGCTGAGTGTATACCAACAATGAACCCATCTCTAGTTGATACTAATGGACTGCCACACTGCCCATCCTTGGTTTGAATCCAATGCTTCC
>SRR3466597.1967334/1
CCTTTAATCATGAAAAACACCGTAGATTGCGGCGGACATATAGACTTGTCTGTGAAATCGCTTTTCAAG
>SRR3466597.881543/1
TTGACTGCATGATAAGGGCACACCGAGAGGCGAAGGTTGCTGCACAGTTGCAGAAAGAGAGCGAGTGGGACAATATCATCAATAGAACTTTCCAGTATTC
>SRR3466597.2337588/1
AGTTCCACGAATAAATGCTATGGCCACAAAACTTCAATATCCAAGGATGAGGGGAGAGGTGGTTGTAAACTTGAATCACCTTTTAGGATACAAGCCACAG
>SRR3466597.864405/1
GCTATAGCAGAAGCATCATTCACATGACATTCATCAATTATGACAAAATCGTATGTTTTTACCTCAGCTATGTTTCGTGCAAAATGGTGTAAAGCGAATC
>SRR3466597.1545177/1
ACAAAGCATGTGGTTAAAGGAAAGTGTCCCCTCTTTGAGCTCTACTTGCAGTTGAATCCAGAAAAGGAAGCATATTTTAAACCGATGATGGGAGCATATA
>SRR3466597.1972168/1
TCAACCTTAAGAACTTTCTTCGTGCCACTATTCACCAAATAAGCATGGATTGTGGTGTGGGTGCTAAGACTTTGAGGCTCTATCTCATCGTCAATTAA
>SRR3466597.431651/1
CGCACTACATAGGAGAATTAGACCGAGGTGACCTCACTTTGTCGTTCGCCTAAGTAATGAGACTAATAAGACATATTAAAACATATAAGATACCATTCAA
>SRR3466597.1360962/1
TCATTAAGAAGCATAAAGGCAACAATAGCGGGCAACCTTCAACAGTGGTGGACAACACACTCATGGTCATTATTGCAATGTTATACACATGTGAGAAGTG
>SRR3466597.1276425/1
ACTTTGAATCGCCAGAGTTGCCAATGACCAGATGTCTCTTCGTTGGATGCTTTAGATCCGAATATTGAGCCTTACCATCTTCAAGAGTAACACAACAACA
>SRR3466597.833605/1
CACGATGTGAACCGTAACATGCACACACTATTAGGGGTCCGCCAGTGATAGTTTCTGCGTGTCTTTGCTTTCCGCTTTTAAGCTTATTGTAATATATATG
>SRR3466597.1371609/1
GACTGTGTCAGGGTTAACCATTCGCTATCCCTAGCAATGGAAATTGTTACTATTAAGCTGGCCACCCAAGAGATGGACATGGCGT
>SRR3466597.2181878/1
AGAGAAGTTGAATTCACAACTCAGTTTCCCGTGAAACTCAAGATAGAA
>SRR3466597.899074/1
GCAAGAAGTTTTTCTGCTTCTTACGCTTTGGCATACTATTATGCACAAGTTGAGTGG
>SRR3466597.1751537/1
GTCATCACTGCCTGATGCCACGCGGCAAACTGCTCATGTGTGGCTC
>SRR3466597.2102827/1
ATGCTACAAAGCATACGAAAGAAAATATTGCAGTGCTTCAGCAGGCAAAAGATCAATTGCTAGAG
>SRR3466597.847861/1
CTACAAGTTTATCACAGTCTCGAGTGTCCTTTCCTTGTTGTTGACATTCTTATTTCAAATTGACTGCATGATAAGGGCACACCGAGAGGCGAAGGTTGCT
>SRR3466597.1902260/1
ACATATACTAGTATGTTGTCGCCACAACTAATCACATCGGCGTTGGCACCTGTCCCTTGTAAACTTACAAATTCCTGAA
>SRR3466597.966077/1
TACTCTTGAAGATGGTAAGGCTCAATATTCGGATCTAAAGCATCCAACGAAGAGACATCTGGTCATTGGCAACTCTGGCGATTCAAAGTACCTAGACC
>SRR3466597.29276/1
ATGCGCTCTTCCCTTTGTGGCTCTCTAAATTTCAGCTTTTGAGGAAATGGTGGGAAATCCTTAGGCATGCGAATAATTATCATGTCCCTCCCATCAATGA
>SRR3466597.1001991/1
GCGTGGGGCTAGAGGGCAATATGAGGTTGCAGCGGAGCCAGAGGCGCTAGAACATTACTTTGGAAGCGCATATAATAACAAAGGAAAGCGCAAGGGCACC
>ERR996011.39031/1
ACCTGCAGCAACACTATTCTGATACATGAGGATAGCTTGGCTAGAGAAGTTTCTCATAACCTTCCTCATAGTTGGCAATGCAAATTTGTAC
>ERR996011.157056/1
CTTTGATGACGTGATTATGATAAACCTCGCGATTAACATAACCAACAATCATTAAGTTACCATCAATTAAT
>ERR996011.182572/1
GTTCGGTTTTTCAGTGAGAATCCTCATTCAGCAGAATATCTTGAATCACAATGTGCCAGTGATTATATTGAGGAGAAGG
>ERR996011.250248/1
CTCGCGTTCCACCCAGTACGTATAGAGATTTGATGAACCTATACCTAGTTTCAAACACAAACGTTCGCGCCAAGAAAATAACTCTCCGTACTGATGTTTGATGAGCTCGCGAGACATAATTTCTTG
>ERR996011.278646/1
GACACACTCAGCTAACTTAACGATAAAGTCATCACTCATGTCCGAGCAGTACCACGGAATTTGAACTTCTTGCACATGACGTGAG
>ERR996011.296484/1
CCTGCAGCAACACTATTCTGATACATGAGGATAGCTTGGCTAGAGAAGTTTCTCATAACCTTCCTCATAGTTGGCAATGCAAATTTGTACATTGG
>ERR996011.304884/1
CTCTCTCTTCCCTTTGATGACGTGATTATGATAAACCTCGCGATTAACATAACCAACAATCATTAAGTTACCATCAATTAATTCTTCACCTTCATTCGCTTGCACCGTGATGGTATTAATCGCTTTTGTCATAGGGAAAAACGTTGATACTCTTGCCACGGAATTCCACTCA
>ERR996011.319320/1
CCAGCATTTCTAGCAGCTTTTATCACAAATGCCTTACCTGCAGCAACACTATTCTGATACATGAGGATAGCTTGGCTAGAGAAGTTTCTCATAACCTTCCTCATAGTTGGCAATGCAAA
>ERR996011.335413/1
CTCTATTCCCGGTTTGGAAATGATGCAAGAGATTGCACTCGATTTCTCTGATTGTTTTTCCTCGCGTTCCACCCAGTACGTATAGAGATTTGATGAACCTATACCTAGTTTCAAACACAAACGTTCGCGCCAAGAAAATAACTCTCCGTACTGATGTTTGATGAGCTCGCGAGACATAATTTCTTG
>ERR996011.340106/1
CCAATTTATCAACATCTCTATTCCCGGTTTGGAAATGATGCAAGAGATTGCACTCGATTTCTCTGATTGTTTTTCCTCGCGTTCCACCCAG
>ERR996011.354526/1
TCGGCATGAAACCTTGTTTATCTACCAAGTGAGCTGTGAATATATAATTCGCTTCAAACATGGATGCTGTCAAAGCTTGCCTCTGTGTAACACTCCTAACTGACC
>ERR996011.433744/1
CTCAGCTAACTTAACGATAAAGTCATCACTCATGTCCGAGCAGTACCACGGAATTTGAACTTCTTGCACATGACGTGAG
>ERR996011.436007/1
CTCAATATAATCACTGGCACATTGTGATTCAAGATATTCTGCTGAATGAGGATTCTCACTGAAAAACCGAACAAGAGATTCATAATCATCAATTCCTC
>ERR996011.526546/1
CCGGTTTGGAAATGATGCAAGAGATTGCACTCGATTTCTCTGATTGTTTTTCCTCGCGTTCCACCCAGTACGTATAGAGATTTGATGAACCTATACCTAGTTTCAAACACAAACGTTCGCGCCAAGAAAATAACTCTCCGTACTGATGTTTGATGAGCTCGCGAGACATAATTTCTTG
>ERR996011.586857/1
CAATTTATCAACATCTCTATTCCCGGTTTGGAAATGATGCAAGAGATTGCACTCGATTTCTCTGATTGTTTTTCCTCGCGTTCCACCCAGTACGTATAGAGATTTGATG
>ERR996011.605463/1
ATTTTCAATACTTGTGTATCCAGCATTTCTAGCAGCTTTTATCACAAATGCCTTACCTGCAGCAACACTATTCTGATACATGAGGATAGCTTGGCTAGAGAAGTTTCTCATAACCTTCCTCATAGTTGGCAATGCAAATTTGTACA
>ERR996011.625574/1
CAATTTATCAACATCTCTATTCCCGGTTTGGAAATGATGCAAGAGATTGCACTCGATTTCTCTGATTGTTTTTCCTCGCGTTCCACCCAG
>ERR996011.805567/1
GGCTTCACTTCTGCTAATTTTCCCAAATTTCCTGTCACAAATGTAAC
>ERR996011.840514/1
CTTGTGTATCCAGCATTTCTAGCAGCTTTTATCACAAATGCCTTACCTGCAGCAACACTATTCTGATACATGAGGATAGCTTGGCTAGAGAAGTTTC
>ERR996011.904946/1
CTCTTACACACTTCTGAGACCCAATTTATCAACATCTCTATTCCCGGTTTGGAAATGATGCAAGAGATTGCACTCGATTTCTCTGATTGTTTTTCCTCGCGTTCCACCCAGTACGTATAGAGATTTGAT
>ERR996011.940698/1
CTCTCTCTTCCCTTTGATGACGTGATTATGATAAACCTCGCGATTAACATAACCAACAATCATTAAGTTACCATCAATTAATTCTTCACCTTCATTCGCTTGCACCGTGATGGTATTAATCGCTTTTGTCATAGG
>ERR996011.972900/1
CCCGGTTTGGAAATGATGCAAGAGATTGCACTCGATTTCTCTGATTGTTTTTCCTCGCGTTCCACCCAGTACGTATAGAGATTTGATGAACCTATACCTAGTTTCAAACACAAACGTTCGCGCCAAGAAAATAACTCTCCGTACTGATGTTTGATGAGCTCGCGAGACATAATTT
>ERR996011.1057660/1
CCTCAATATAATCACTGGCACATTGTGATTCAAGATATTCTGCTGAATGAGGATTCTCACTGAAAAACCGAACAAGAGATTCATAATCATCA
>ERR996011.1202493/1
CTCAGCTAACTTAACGATAAAGTCATCACTCATGTCCGAGCAGTACCACGGAATTTGAACTTCTTGCACATGACGTGAGTTATCG
>ERR996011.1221866/1
CTCTTCTTTGTTTGCAATCCTTCATCTTTCAGTTTCTGAAGTAACTCATTTACACGCTCAACTTGTGGGGC
>ERR996011.1225250/1
GCACATTGTGATTCAAGATATTCTGCTGAATGAGGATTCTCACTGAAAAACCGAACAAGAGATTCA
>ERR996011.1248576/1
CTTCACTTTCCATGACAGCCTTGCAATATTCCACAACAATCATTAGTATAATAGTGTTATCGACAACTGTAGAAGGTTGTCCACTATTATTTCCA
>ERR996011.1254369/1
ATGCCTTACCTGCAGCAACACTATTCTGATACATGAGGATAGCTTGGCTAGAGAAGTTTCTCATAACCTTCCTCATAGTTGGCAATGCAAATTTGTACATTGG
>ERR996011.1270424/1
ACTCAGCTAACTTAACGATAAAGTCATCACTCATGTCCGAGCAGTACCACGGAATTTGAACTTCTTGCACATGACGTGAG
>ERR996011.1371856/1
TCTCTCTCTTCCCTTTGATGACGTGATTATGATAAACCTCGCGATTAACATAACCAAC
>ERR996013.13602/1
AGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGCTTCTAACTCTCTTTTTTTGTCAATGATCCTGTCAATGAGTTCAT
>ERR996013.32029/1
TGATCCTGTACGCACACGACCACGATATGCAAGCGAAACATCAAAGCCGTATAAAGCCATATACGACTCGTGCAGTGCGTTTGCT
>ERR996013.75116/1
GTTTCACTCTTTCTCTTTCCTTCCAGAGTGAGGATAGTTTTACAGAATCGAAACCAATGTTGATTAAAAGTCGCTCTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGC
>ERR996013.134143/1
TGCAGAATCGAAACCAATGTTGATTAAAAGTCGCTCTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGCTTCTAACTCTCTTTTTTTGTCAATGATCCTGTCAATGAGTTCATATTTATTTGAC
>ERR996013.138713/1
ATCGAAACCAATGTTGATTAAAAGTCGCTCTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTG
>ERR996013.173891/1
GATAATTTTGCAGAATCGAAACCAATGTTGATTAAAAGTCGCTCTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGCTTCTAACTCTCTTTTTTTG
>ERR996013.193314/1
CAACGTACTCCATCTTTACAAGTATGTCAACCAATGGGCTACCTTTAAGTATCATATGATCAACATATTTGTAAAATCTAGCCTTCTTCGC
>ERR996013.194974/1
CTCCACTCACTCATGTTCGTGGCTAAGTATGTGCTACATATACCGACAGCATCTGTATGCAACAACAAGTTCTTCATCAACTCAAACACTGGACGTGGC
>ERR996013.198787/1
GCAGAATCGAAACCAATGTTGATTAAAAGTCGCTCTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGCTTCTAACTCTCTTTTTTTGTCAATGATCCTGTCAATGAGTTCA
>ERR996013.236824/1
CGACCACGATATGCAAGCGAAACATCAAAGCCGTATAAAGCCATATACGACTCGTGCAGTGCGTTTGCTAACACTCGCGTAGGAACACAAAT
>ERR996013.351799/1
ATTAAAAGTCGCTCTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGC
>ERR996013.372913/1
GCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGCTTCTAACTCTCTTTTTTTGTCAATGATCCTGTCAATGAG
>ERR996013.376059/1
TCCAGAGTGAGGATAGTTTTGCAGAATCGAAACCAATGTTGATTGAAAGTCGCTCTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAAATAACTTCTTGTGCTTCTAACTCTCTTTTTTTATCAATGATC
>ERR996013.453686/1
GCGAAACATCAAAGCCGTATAAAGCCATATACGACTCGTGCAGTGCGTTTGCTAACACTCGCGTAGGAACACAAATTAGCACAGAA
>ERR996013.484483/1
GGATAATTTTGCAGAATCGAAACCAATGTTGATTAAAAGTCGCTCTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAGATAAC
>ERR996013.489616/1
CCACGATATGCAAGCGAAACATCAAAGCCGTATAAAGCCATATACGACTCGTGCAGTGCGTTTGCTAACACTCGCGTAGGAACACAAATTAGC
>ERR996013.497754/1
ATTGGTTTTGATCCTGTACGCACACGACCACGATATGCAAGCGAAACATCAAAGCCGTATAAAGCCATATACGACTCGTGCAGTGCGTTTGCTAACACTCGCG
>ERR996013.515914/1
CGGGAGAGCAAATTTGTACATTGGTTCCATAGGGTATTCTGAATCATCAATATCCTCACCCTGCGCATTTAGCTCAACAGCTCTCCAC
>ERR996013.518430/1
TGCAGAATCGAAACCAATGTTGATTAAAAGTCGCTCTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGC
>ERR996013.656197/1
CTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGCTTCTAACTCTCTTTTTTTGTCAATGATCCTGTCAATGAG
>ERR996013.656523/1
GTCATAATTGTTATTGGTTTTGATCCTGTACGCACACGACCACGATATGCAAGCGAAACATCAAAGCCGTATAAAGCCATATACGACTCGTGCAGTGCGTTTGC
>ERR996013.692538/1
GATTAAAAGTCGCTCTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGCTTCTAACTCTCTTTTT
>ERR996013.696477/1
TATTGGTTTTGATCCTGTACGCACACGACCACGATATGCAAGCGAAACATCAAAGCCGTATAAAGCCATATACGACTCGTGCAGTGCGTTTGCTAACACTCGCGTAGGAACACA
>ERR996013.738638/1
GGATAATTTTGCAGAATCGAAACCAATGTTGATTAAAAGTCGCTCTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAGATAAC
>ERR996013.747299/1
GCAGAATCGAAACCAATGTTGATTAAAAGTCGCTCTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGCTTCTAACTCTCTTTTTTTGTC
>ERR996013.752745/1
TGTTATTGGTTTTGATCCTGTACGCACACGACCACGATATGCAAGCGAAACATCAAAGCCGTATAAAGCCATATACGACTCGTGCAGTGCGTTTGCTAACACTCGCGTAGGA
>ERR996013.756913/1
CTTGGCTGGAAAAATTTCTCATTATTTTCCTCATTGTTGGGAGAGCAAATTTGTACATTGGTTCCATAGGGTATTCTGAATCATCAATATCCTCACCCTGCGCATTTAGCTCAACAGCTCTCCACGATTT
>ERR996013.793496/1
CAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGCTTCTAACTCTCTTTTTTT
>ERR996013.804840/1
CTTGGCTGGAAAAATTTCTCATTATTTTCCTCATTGTTGGGAGAGCAAATTTGTACATTGGTTCCATAGGGTATTCTGAATCATCA
>ERR996013.860827/1
CAAGTATGTCAACCAATGGGCTACCTTTAAGTATCATATGATCAACATATTTGTAAAATCTAGCCTTCTTCGCATAGAGCCAAAGAGTG
>ERR996013.909965/1
ATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGCTTCTAACTCTCTTTTTTTGTCAATGATCCTGTCAATGAGTTCATATTTATTTGAC
>ERR996013.937909/1
GCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGCTTCTAACTCTCTTTTTTTGTCAATGATCCTGTCAATGAGTTCATATTTAT
>ERR996013.947899/1
CTCCATCTTTACAAGTATGTCAACCAATGGGCTACCTTTAAGTATCATATGATCAACATATTTGTAAAATCTAGCCTTCTTCGCATAGAGCCAAAG
>ERR996013.967303/1
CTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGCTTCTAACTCTCTTTTTTTGTCAATGATCCTGTCAATGAGTTCATATTTA
>ERR996013.994308/1
CTACCTTGATACAATGCTCCCATCGCTGCTTTCTTGTTGAGATCACTCAAAATCTCCATTGGATCCCACTCTGGTCCTGAATTCCCA
>ERR996013.1066941/1
CATCTTTACAAGTATGTCAACCAATGGGCTACCTTTAAGTATCATATGATCAACATATTTGTAAAATCTAGCCTTCTTCGCATAGAG
>ERR996013.1134829/1
TGCAGAATCGAAACCAATGTTGATTAAAAGTCGCTCTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGCTTCTAACTCTCTTTTTT
>ERR996013.1154101/1
CAAGTATGTCAACCAATGGGCTACCTTTAAGTATCATATGATCAACATATTTGTAAAATCTAGCCTTCTTCGCATAGAGCCAAAGAG
>ERR996013.1172801/1
TTGCAGAATCGAAACCAATGTTGATTAAAAGTCGCTCTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTG
>ERR996013.1177982/1
CCCTTTCCTTCCAGAGTGAGGATAGTTTTGCAGAATCGAAACCAATGTTGATTGAAAGTCGCTCTCGCAGCGAAAACAAATCGCCGTATTGATGTTTGATGAGCTCGCGAGAAATAACTTCTTGTGCTTCTAACTCTCTTT
>ERR996013.1222223/1
CGCCGTATTGATGTTTGATGAGCTCGCGAGAAATAACTTCTTGTGCTTCTAACTCTCTTTTTTTATCAATGATCCTGTCAATGAGTT
>ERR996013.1249443/1
CATTACACATGTATTTATATTTCATTTCAATACCTTCGTGTGCCATCACTTCTCTACAGTACTCAACCACAATCATCAGAATTATG
>ERR996013.1295292/1
GCCGTATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGCTTCTAACTCTCTTTTTTTGTCAATGATCCTGTCAATGAGTTCATATT
>ERR996013.1301772/1
GTCATAATTGTTATTGGTTTTGATCCTGTACGCACACGACCACGATATGCAAGCGAAACATCAAAGCCGTATAAAGCCATATACGACTCGTGCAGTGCGTTTGCTAACACTCGCG
>ERR996013.1308814/1
TATTGATGTTTGATGAGCTCGCGAGAGATAACTTCTTGTGCTTCTAACTCTCTTTTTTTGTCAATGATCCTGTCAATGAGTTCATATTTATTT