Mercurial > repos > abims-sbr > cds_search

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planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3a118aa934e6406cc8b0b24d006af6365c277519
author abims-sbr
date Thu, 09 Jun 2022 12:40:00 +0000
parents eb95bf7f90ae
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
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1 *************** CDS detection ***************
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
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eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
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3 Files processed: 4
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
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4 Files with CDS: 2
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
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5 Files with CDS plus M (codon start): 1
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
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6 Files without CDS: 2
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
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eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
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eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
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eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
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10 In locus with CDS regardless of the Methionine :
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
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eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
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12 *************** 1st filter : selection of the locus ***************
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
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eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
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14 Total number of locus recorded = 2
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
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15 Number of locus with 1 species : 1
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
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16 Number of locus with 2 species : 0
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
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17 Number of locus excluded (exclude if not at least 2 species in the alignment)= 1
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
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eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
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19 *************** 2nd Filter : removal of the indel ***************
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
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eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
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21 Total number of locus recorded = 1
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
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22 Total number of locus with no indels (SAVED) = 1
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
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23 Total number of locus, when removing indel, wich are empty (EXCLUDED) = 0
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
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