Mercurial > repos > abims-sbr > cds_search
comparison test-data/cds_search.log @ 0:eb95bf7f90ae draft
planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
| author | abims-sbr |
|---|---|
| date | Fri, 01 Feb 2019 10:26:37 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:eb95bf7f90ae |
|---|---|
| 1 *************** CDS detection *************** | |
| 2 | |
| 3 Files processed: 4 | |
| 4 Files with CDS: 2 | |
| 5 Files with CDS plus M (codon start): 1 | |
| 6 Files without CDS: 2 | |
| 7 | |
| 8 | |
| 9 | |
| 10 In locus with CDS regardless of the Methionine : | |
| 11 | |
| 12 *************** 1st filter : selection of the locus *************** | |
| 13 | |
| 14 Total number of locus recorded = 2 | |
| 15 Number of locus with 1 species : 1 | |
| 16 Number of locus with 2 species : 0 | |
| 17 Number of locus excluded (exclude if not at least 2 species in the alignment)= 1 | |
| 18 | |
| 19 *************** 2nd Filter : removal of the indel *************** | |
| 20 | |
| 21 Total number of locus recorded = 1 | |
| 22 Total number of locus with no indels (SAVED) = 1 | |
| 23 Total number of locus, when removing indel, wich are empty (EXCLUDED) = 0 | |
| 24 |