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view test-data/cds_search_methionine.log @ 1:c79bdda8abfb draft default tip

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planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3a118aa934e6406cc8b0b24d006af6365c277519
author abims-sbr
date Thu, 09 Jun 2022 12:40:00 +0000
parents eb95bf7f90ae
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*************** CDS detection ***************

Files processed: 1
	Files with CDS: 1
		Files with CDS plus M (codon start): 1
	Files without CDS: 0 



In locus with CDS considering Methionine : 

*************** 1st filter : selection of the locus ***************

Total number of locus recorded  = 1
	Number of locus with 1 species : 0
	Number of locus with 2 species : 0
Number of locus excluded (exclude if not at least 1 species in the alignment)= 0

*************** 2nd Filter : removal of the indel ***************

Total number of locus recorded  = 1
	Total number of locus with no indels (SAVED) = 1
	Total number of locus, when removing indel, wich are empty (EXCLUDED) = 0