Mercurial > repos > abims-sbr > filter_assemblies

comparison filter_assembly.xml @ 2:000dbfafe31d draft

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planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ef336d64317cbf496202203c7adcd368249e99f9
author abims-sbr
date Mon, 30 Jun 2025 12:23:02 +0000
parents a83562c0719f
children faadbce1bbd2
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1:a83562c0719f 2:000dbfafe31d
1 <tool name="Filter assemblies" id="filter_assemblies" version="2.0.4"> 1 <tool name="Filter assemblies" id="filter_assemblies" version="2.0.5">
2 2
3 <description> 3 <description>
4 Filter the outputs of Velvet or Trinity assemblies 4 Filter the outputs of Spades, Velvet or Trinity assemblies
5 </description> 5 </description>
6 6
7 <macros> 7 <macros>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
32 ]]> 32 ]]>
33 </command> 33 </command>
34 34
35 <inputs> 35 <inputs>
36 <param name="inputs" type="data" format="fasta" multiple="true" label="Input files" /> 36 <param name="inputs" type="data" format="fasta" multiple="true" label="Input files" />
37 <param name="percent_identity" type="integer" value="100" label="Overlap percent identity cutoff" help="Cap3 parameter (-p N); minimum percent identity of an overlap. The specified value should be more than 65%." /> 37 <param name="percent_identity" type="integer" value="90" label="Overlap percent identity cutoff" help="Cap3 parameter (-p N); minimum percent identity of an overlap. The specified value should be more than 65%." />
38 <param name="overlap_length" type="integer" value="60" label="Overlap length cutoff" help="Cap3 parameter (-o N); minimum length of an overlap (in base pairs). The specified value should be more than 15 base pairs." /> 38 <param name="overlap_length" type="integer" value="60" label="Overlap length cutoff" help="Cap3 parameter (-o N); minimum length of an overlap (in base pairs). The specified value should be more than 15 base pairs." />
39 <param name="length_seq_max" type="integer" value="100" label="Minimum sequence length" help="Keep sequences which length is higher than the minimum sequence length " /> 39 <param name="length_seq_max" type="integer" value="100" label="Minimum sequence length" help="Keep sequences which length is higher than the minimum sequence length " />
40 </inputs> 40 </inputs>
41 41
42 <outputs> 42 <outputs>