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comparison test-data/phylogeny_concat.fasta @ 0:acc3674e515b draft default tip

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planemo upload for repository htpps://github.com/abims-sbr/adaptearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
author abims-sbr
date Fri, 01 Feb 2019 10:28:50 -0500
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-1:000000000000 0:acc3674e515b
1 >Ac
2 gtacatgggcaagtttttcttcgaatgataaggtgcatatggatcattggcataatacttgggtatcttaaagtatctgttgaccattctgtccagcatccagcactggcgctgtgtgcagaagacatggtgctgcaggtgtgccactctggcacccttcttcttccacagcttctcgtgtcggccgtgcatttcagagcttcctcagcgtactccagaagagtaacaaagctctctttggagccctcgggcagaattccattggggatctccacaatgagcttccgaccaagaagcagcgtttcccagctgacctccaagcaatctgtcagagtgatacggaagcacaaactcgaggcagtctgtgccttcgccaatgtgtttacattttccggcaggccattggcgctgacagggggctcttttaacacccccacaccgttgccctctgtcttttcagacacgttgacggcgtggggctcatcaggagcaccaccgaggcccaggacccaatcgtatacaataccgcgagggcaaaccaaagccataaccgtgcattgttcctgctgctcggttttcaatgacaactccaaacaaaccacgattcacacgcgagtcttccttttctttgccacttgttgtgaacccatattcaaatacttggtttatttgattatgaggaatgccaccaccacggtcagatattcttataatgaaatcaattttgttgttggcaatagtaacagacacaggtggcatattctccagggaattcagatgattttctactgtagctctcattgcattcttcagcatctcatgtataatgtactcaagtggtggtgcaatgtatggaaaggttgcatttacatgaccattgatacgaacatctggccagatcttgttgtatacatgtccttgtcttcaggatttgacatgccatggtcttctttgggtttcactgtctctgtgcttcctggtttgtctacaagtttgactacatccttatcagatgatggagctttgttctctgactgctttgaagaacttggatcagtcttggaaatattttcacctggaagtcttgctggtctccagaactccttggcttgttccttcgtcagaatccaggcttgtttagatatatccagagcctggtctgggatgggtgacgataataagaacaatgaacatattaacctcaaggttacaggacaggatggcagtgttgtacactttaaaatcaagaagaacactcccctgaggaagctgatgaatgcatactgtgacagaacaggtgtcaagagtggagcaatgcgattccgatttgatgggcaaccaatcaatgaaacagacactccaacacagctggacatggaagatggtgatgtgattgatgtattccaacagcagactggaggcgtcgagttgacccacgtaatgcttcacgtctggacacaagggatcccagacaggctgaaccacgacgtgctgcatcgcaaccagcagcacctaccccagcacaaagattacaggctccaccatcatctggaggaagcaatgggccaatttcatctcaggatcaggaaaagactgctctcatcatgcaggtgttacaacgtgctggtgctggtgccgaactatcaggtgatgaatgtggtgatcacgtcgttcgtgttcgtctgcgccgcccacgagatccactcgctgaccgtcaagctgacggactacgccgtgccaaacgactggagaatactgctgaggaacatggtctgctttactgccgttctgatacctgtggccataacacacggtgcatttggcgtatgtctgggaattgagtattctgtggcaatgacctacagaatggtgtcatgtcaaaagcatccacttctgcatcctttaaatgaggatctttatttattgcaggatttggtggataagggtgtgagatgccacttggtaccgaggtgtccttgctcgtggcaccaactgctgtatatgaaggtggtacagtcaaaagaaatgcaacgaataaaccggagctaccagaaaaaccaaaagtttcaagaatggagcaagtttatgaaaacataccgatgtccgaacaaaaacaaggtctgcagagagacgaaagtaatggaaaacgtcaccttccattccagcttcgtggagttgatggcacaacttacgctgacctcgagatcattctggtggcttgggctggcactgatagcagatggtgctcttggtggcggtgctatgcgtgtgcctcctgggggaggtggcagtattcccgtgccatgtccacggctacgctgcttgctggcattgcttgggctaccatgctccctgtttttctttgtagctatatttatcctaatggtttggccctctttgaagccaagatccagcttaggtccagagctaagtaggtctttgttgtccttctgttcttcaagtcttcagtacaacctggtgatcatgttatcccattgtacatccctcagtgtggtgaatgcaaattctgcaaaagtccgaagaccaacctctgctcgaaaatcagagctactcaaggtgcaggtaagatgcctgatggcacaagcaggttctcttgtaatggcaaggagctgtatcacttcatgggctgcagcacattcagtgaatataccgtggttgctgaaatatctgtgtgtaaggttaatccagaagctccactgggcaaggtttgcttacttggctgtggaatatcaactggttatggagctgccttccggaactgtagctgttttcggcttcctgtcgtcgtctggtgcggaagaacgcgcgcctgtccacctggctgtgtgtgcatgttgctgtttatgcatgttcatgtcagtgcttgtgatcggtgagttagaacgagcgagtgagcgggtgcgtgagacatccgacaacatcctgtctggtcgttcactgtgtactgcttttgaatcatttcctaaaggtgaaggtcgtctcgtggctgcttgccctcgttgtgtggagtgcgtgattgaccctgtaatgttgggagccaaacataatgtactgtggcgccacctggtggagaagaatgttgagcgccaagatgatgtacatgaggtgaaaggaagccatcagcaaggcttgaggcctcatcttatgtggccggatcttgaacaactgaatccaaagaaaccgaatgccaattgcttccattccaccaatggcacagctgagcaggaacaagattccactgtgatgtgtaccttctgtccctgtatgtcaatggattttaccaggtcgccatctgtcagtgtctgtttacgttctctggaatatttgggcatgagagtatctttgagagttctatgttcagttccttgttgtctgtcatcaatggcagcaattgtccatggcaatcctaagccaaggaagacattgacagagttggacccagttacatttccaattgagttgtcagcatatttctcctgtgtggcagcctgcttgctggcaaacagatctggcaaacttgttcccagagctacaaatgtgatggcagtgacgctgtccttcaggccaaccaaacaaccgaagatagatgccaagtccccaacaacggcagtaagtagaccaatcatgataagggcaatgaagaaggctaaccagccaccccagatggaaggaggaggcacaagtgcaaaaatgatcttccagccaaaggttaagaagtgcatgatgtctgtcttcactcgactgagatccgtccccaacgctgacgtcacaaatgtccggcccccgcgctgcgggaagaccttcaccattcacttcatgcgaatcctcgaccgccgctcgttcccctccataggcctccactgcctgctgaatgaccgactggacgaaatctctgacctgcacgtggaagcccatttccaactcagacgacatatacatggacagatatctcgctacttcctggatgacgtcatcaacgttagtcttgacttccctgatccacaaggttctatgagataccttgaagccaatacaacagccctgactccacctaacagagggccgttttggtactccacagatgttgatacgaggacacaggcaccctttggtaggtcagtcctccagtgtcgcagttcacaaatatctctagttggatgtggggccatgttgttgagcacatacttcatggtggatcttgttatatatgagcgtcttgtcataatcggcagtgtagttctttactgtgccataaactgcatctatactgaggatgttgaccacttctatacgatcaaagtaaataatgacacctccactggtaccacatggtacattcttgacctcatctgtttgacaatgtcactgccagaccagccacataacacagggctctccagggctgcagggacagctgatagcacaacgtgtgcagtatccgcgaaaaggcgaagatccggaaatgccaaagggccacctcagtcgacggcgacgtcagtacgtaaaggaaaccaatcagcacgaaagggggaatgttctccatgtcatgtcatcagatcggcaatgttcttttccaggtcatcaattctgtgtcccatgtcatctattcttgtgataacttggtcggacatgttctggaatttatcctgcatctgctgtaaaaggttttgcacatattgtgttagatcctgtatgtctttaggatcggcactgttggtgataaaaaagaagcctaatatttttccacccaaatgttttcgtcttgcctcttcatggtccataatcccacctgatgttgtgagcacaatgtacccaaactgtcttgatggcagtaggttagttgtccatttctccatgtctctgatgcaaacatcaaaccttggacttatcacaccacacttgttcagtcttcctgtcaaattaacaacaatttttcctgctctgtggtcatcaatgatctcaaactcaccaatgaaaagtgtgcggtatatgttccttcctaattttgtcctaaactggatgtatgcctctggatcatccttttctggatcttttgttgtatctgtgagaactgcttccatttcagcctctttttcttcctccttgctcataatttctgctctaaccttatcaagcaaggcatactgtgacatctgctgtatgatgacaggagctggtggtggactgtgcagactggccatgccagccagactcgtcatgcttgctgaaccattcatcatttgctgctgttgctgctgtgttagctgctgtggtttaactttgcacacattgctatggtccagttcattcttgttactggtgtttagatctgatgaggacatcacagacgtggcactctgtgcagaggtaatattttctgtgaggttcttcatgagttcggtaagtttgctagtcagatcttcatctggctgctttgccgacgttgttggtatcgttggtcgttcatgtgatgtagtcggcagatgttctgatttcgtgttctgcgctgtcgttggacttggtaaggactgggtcggtggcgccgcggtgccgtcgcggccaagactgcagtcatcagagtccgatgttagtgtgaacgtggctgggcaggaaacacgcagaccaattgacctcagtgagccatccagcggagaactgacacctggacaaggatccgaggctcggggatctacaacacgaggggctgaagctaagggatccacacccagagattctgaggtcataacatggatggggtcgacattgccaagcttcttggtgtgtgttttcagtggcagtggtggtggtggtgttgatttcactggtgactgtgcaggactcgagtctcctattgatgtgtcctcctcaataatgccctcatccgtgtgttcagcatctgcaggaagtggattggcagttatgcgtatgctgcactcggatcctttaaaccacagtgattcccattccagggaggcagatgccgtttccatggattcagacacatttagtgttgatggtagcagacgtttgaagtcaatcgtttgcttgcctcatgacagacaacagaacatctctgatgatgaattgaactccaaacatacgaagaaatcacataaattgaagaaagtgaaaagacatcaaaagagaaaaaagaaatcttccattttgggcgaatcaggatcttgcacaagtggtgattcagtggactctggagaggcggtcgcttccggcatctcttcagtgttgtcaggatctgtgatgtcttgtacaagaggttcattagatatatcctctattattgtatccgagggatccgtaacatgggcgaagtgccatctaatgccatcgttactgcctcttttaaatcggaacaagaaagagaaatctactggacgctcatcaactatgctcagcagttctttgcctctgataacaatgaagattttgccatgttttcttcaccaatgcttgaatacaaagactcagcctctttgtcatcagctggtttgtcttccacagtttcagtttccattggttcctcctcatcctctttggatgcctcctcagcagcagcctctgtacgtatcttttcctctgcctccttggcagcccttcttccacttcttcttctgggactttcatcttcctcctgttccttggcactggaccttccctttctggttgctttgcgaggcgatggtgttttcaactttttcacttcctcttcctctggctggtactcctcttcctcttcctcctcttcaccctgtgattttcgtccttgacctctcctgccacgtgaactccggccagcacctcgaccagtgcctctgccacgtggctttgactgtgagcacccatcttatcatttgcatgacatacggcacaactcttttcgtaatcctcctgacctggagctaccgtatccttcttcttagggaggtctcgaacttcgctaaatggtggattgacatcggttcgtgggtctttcaccacaaccaacttagccccatcatcttcacaatctttcatacatcgcttcccaattgctccaatattcttgccatccagtgtatgtgtgtgaaagcatgtgtagaactggtactgccagccaaatcacagcatcgtttagaagatgcccacgccgtctacgtggtgggagtccacacacacacacacgtactaaggactaagttcatagagatgctatactcaacaagaaaaagtcactatcatacagtgattacccatcacttagtgcagacaaacacatcaccattacattttccatcaacaacagtccatggatttacagattttgtcttagttgcgactttcctactgtttttagtaattctgcccgactgcatgctgcccactggttttaggtttaccttggctgttgatttgtacgattgcttacgtggcgctggaagtgttttggcgtcactggctggcaggttgttttcatctcttgttgtaagcggagcacgcaatttcttgctggagttatgcctcggtaccggcacgtcagccagcctatcagggacggatgttttgctgacgtcaccaaggcttgccgatgagcggcgttttgattcgctgctgcgtcgattccttccggaactgccgacagacgaatcggccaatgacgtcaacgaactgggacggctgctcgtacttccggcgcgcgactgcggcctctggttgctgaataatgaactacttccattcatgtgggcatcaagcttaggccctttctgtgacagtctctccagcgtgtcgtcgctgacagtctcgtttgcctctttttctaactccaaccgaaatatatatctcgtgctgcccttcttaatatcagtaacgtttacgctgtattggccttccagtgagctgtccttgagtacatcctctgttagtttagtaaatgttgccgcttcctttatgtacttacacactctagctatatcttcacatgatgcaccatattccattgctaaggcagcctcattaataagttctccagcaaccgaagcaacaatatgtacaccaagaactctgtccgactctttatctccaataacttttaccaagccatctgtatcattgttagtttttgcccgactgtttgctgccaaaggaaactttcca---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3 >Pu
4 cctgcggcaacatcgcctgttcacgtcgaacccgaagctggactgctgcccgacgataaccgagctgacccagcgggcggcgggcatcaacccgcagggcctgctcctcgagctcttccacacgcccaacttcacacagacgttctacgagacggcctgccacccggcgatcaagggccggccgtgccagttcatcgaccgccagtacgcggcgtacagcaagtgcatacagcagtactcgtacgtgtacgcgctcgggcggacgtacgg------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5 >Am
6 aagaagtccgtgacccaggaggtcgtgacccgagaatacaccatcaacatccacaagcgtatacatggcattggcttcaagaggagggcgcctcgcgcggtgaaagccatccgagagtttgccttcaagcagatgggcacagaggatgtccgaatcgagacccgactcaacaagcacgtctggtccaag------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7 >Ap
8 tctgatccatccataatggctgcatccatctggacttctcctttggcatttagggctgatccagtacctgcatcaaacacagagttgttctccatatccatgacagccaattccacaacatctagagcagatccaccatttaataagagctttaaccctttaagtgcagcctttttaaccccttgtctgttttgcatggccatgctgtctgggatggcccaagctccacca---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9 >Pf
10 tgtagcattaccatgtattggcattccactctccgtcatgttgacaaccaccgttccggcgagtccaaaatcatcttcaaagatataatctggtattgttatgttaatgtcatagagagtcggaaagtgattttcagttttatactgatgcgtgtatattttgccgtatccatgcacctctattgtccaccatccgtgtttacaaggatgatgttgttgtatcgttccctcgagataaccatttctaacttgttgttcgcgccatctcttcacgtactggccggcgccatctcgaaggtatatgtccacagcgccatgtgg------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11 >Pg
12 gaagccatggcacgccgggagaagggcaagaagaagtctgttaccaatgaggtggtaactagagaatacacagtgaatatccacaaaagaattcatggaataggtttcaagaagagggcacctcgtgcgatcaaggctatcaggcagtttgcctttaaacagatgggcactgaggatgtgcgtatagagacgagactcaacaaacacatttggtcaaagggaattagaaatgtcccattccgtgtgcgtgtaagattggctcgtaaaaggaatgaagatgaagactcgccacacaaactttacaccttggtctcctatgtacctgttacaacattcaaaggtacacagacagtaaatgtggagagtagtgac---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13 >Ph
14 cgccgtgagaagggaaagaagaagtccgttaccaatgaagtggtaacaagggaatacaccataaacatccataaacgaattcacggaattgggttcaagaagagggcgccacgtgccatcaaagccatcagacagtttgcc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15 >Ps
16 acatggagtagcattggtcgaccacgagtcaatggcaagcttgagatgacaaggagtatcggtgatgttgcggtgtcggcatgcggtggctccctcatggtggcaacaaggagaactacagctctgctcgaaactgatgatatattcaaacacaaagatgtgatatgtttaggtgtaatattttgtatgatattcttggtgaccttgcttcttgtggcagcgaccttcacctcacgaccattgagcgcagactttctgtcatcttcaaggaagacaaaatgtgtcatggcatggatactcgcgtatcccattgtaatcatctttttcgtttatatacgttactaccaagacgaggattgcatagatctgacaccttatattatacctcaggttgacaagacttattgtggtgctaatcttgatgacttctataaaaagtccatgttgacatttgaagcttatgtcattgccctggttggtgctgtactagtagtcttaagtatgttccatctgatgcacactgcagccaattacattcagatccacgaatctgggccgacgaattacgatatttataagaacgaagtggccaataaacatccatcgggatca------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17 >Pp
18 acacagaaggaagcacagagggcctaccaagaagaactaaagagacagattgaggagcagaagctgataaaacaaagggaaaaggaagagagagaaagatacgataagaagctagatgacgaaattaggaactatgacccctttggacgaggtggtggaggagcaccaatggatggtgaatcgtttgctagaggtggtcatggtatctttggtgaaccattgtctgatgct---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19 >Pa
20 gagctgtcctttgtgctgtcatctttaacatttatagccacatttctgtttgcatcacttgccatgaagaattaccatggcaacaagtatccaccaatttggtttcctagtgatggtggcttcacctatcatgtgataagtacagcgtctgagtggataatgggatgtagaaaatggtacgactatgcctgtaagccaatggattattacacagaaacaaaaatcttgcaagaaaagattgtcctagaagccaatagtgatgacttttttacagtagctatccgtccacatggaatctttggcccacgtgacccgcacatggtgcccactactgtacgcactgccaaggcaggaaaaatgaagttcaaaataggcgatgggaaaaatattgtggatttcacttttgtggaaaatgttgttcatggtcacatt------------------------------------------------------------------