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comparison oligator.xml @ 0:a811f7256f6e draft default tip

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planemo upload for repository https://github.com/abims-sbr/tools-abims/tree/master/tools/oligator commit b7e63a01570e9fc381abb01d5b176fcea024e251
author abims-sbr
date Fri, 27 Apr 2018 08:42:52 -0400
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1 <tool id="oligator" name="Oligator" version="1.2.0" >
2
3 <description>Oligator: design PCR primers</description>
4
5 <requirements>
6 <requirement type="package" version="2.7">python</requirement>
7 <requirement type="package" version="1.4.0">argparse</requirement>
8 </requirements>
9
10 <command><![CDATA[
11 python $__tool_directory__/oligator/oligator_cmdLine.py --input $input --tm $tm
12 ]]></command>
13 <inputs>
14 <param argument="--input" type="data" format="fasta" label="DNA sequence - fasta format" />
15 <param argument="--tm" type="integer" value="70" label="Tm temperature" />
16 </inputs>
17 <outputs>
18 <data name="oligator_results" format="tabular" from_work_dir="oligator_results.csv" label="Oligator_global" />
19 <data name="oligator_sens" format="tabular" from_work_dir="oligator_sens.csv" label="Oligator_sens" />
20 <data name="oligator_anti_sens" format="tabular" from_work_dir="oligator_anti-sens.csv" label="Oligator_anti-sens" />
21 </outputs>
22 <tests>
23 <test>
24 <param name="input" value="allseqfasta.fas" ftype="fasta" />
25 <param name="tm" value="70" />
26 <output name="oligator_results" value="oligator_results.csv" />
27 <output name="oligator_sens" value="oligator_sens.csv" />
28 <output name="oligator_anti_sens" value="oligator_anti-sens.csv" />
29 </test>
30 </tests>
31 <help><![CDATA[
32 .. class:: infomark
33
34 **Authors**
35 Oligator was written by Frederic Lechauve frederic_lechauve@yahoo.fr
36 and integrated in Galaxy by ABiMS - Station Biologique de Roscoff - Sorbonne Université / CNRS
37
38 ]]></help>
39 <citations/>
40 </tool>