Mercurial > repos > abims-sbr > pogs
comparison test-data/pogs.output @ 0:7bee3426a442 draft default tip
planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
| author | abims-sbr |
|---|---|
| date | Fri, 01 Feb 2019 10:24:29 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:7bee3426a442 |
|---|---|
| 1 *** pogs.py *** | |
| 2 | |
| 3 Building of orthogroups based on pairs of genes obtained by pairwise comparisons between pairs of species. | |
| 4 Genes are gathered in orthogroups based on the principle of transitivity between genes pairs. | |
| 5 | |
| 6 Parsing input files ... | |
| 7 Creating Orthogroups ... | |
| 8 | |
| 9 Summary before paralogous filtering : | |
| 10 | |
| 11 2 sps 3 sps 4 sps | |
| 12 2 seqs 1394 0 0 | |
| 13 3 seqs 0 163 0 | |
| 14 4 seqs 0 26 33 | |
| 15 5 seqs 0 3 17 | |
| 16 6 seqs 0 0 17 | |
| 17 7 seqs 0 0 7 | |
| 18 8 seqs 0 0 2 | |
| 19 11 seqs 0 0 1 | |
| 20 13 seqs 0 0 1 | |
| 21 | |
| 22 Writing orthogroups with paralogs files ... | |
| 23 | |
| 24 Filtering paralogous sequences and writing final orthogroups files ... | |
| 25 (Dropping Orthogroups with less than 3 species) | |
| 26 | |
| 27 Summary after paralogous filtering : | |
| 28 | |
| 29 3 sps 4 sps | |
| 30 3 seqs 192 0 | |
| 31 4 seqs 0 78 | |
| 32 | |
| 33 270 orthogroups have been infered from 6 pairwise comparisons by RBH | |
| 34 |