Mercurial > repos > adam-novak > hexagram
diff hexagram-6ae12361157c/hexagram/tool_dependencies.xml @ 0:1407e3634bcf draft default tip
Uploaded r11 from test tool shed.
author | adam-novak |
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date | Tue, 22 Oct 2013 14:17:59 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/hexagram-6ae12361157c/hexagram/tool_dependencies.xml Tue Oct 22 14:17:59 2013 -0400 @@ -0,0 +1,40 @@ +<?xml version="1.0"?> +<!-- +Defines how to install the binaries that this tool depends on (in this case, DrL). +Based on the examples at http://wiki.galaxyproject.org/ToolShedToolFeatures +and http://toolshed.g2.bx.psu.edu/repos/jjohnson/defuse/file/f65857c1b92e/tool_dependencies.xml +--> +<tool_dependency> + <package name="drl-graph-layout" version="1.1"> + <install version="1.0"><!-- This is the install tag version, not the package version --> + <actions> + <action type="shell_command">hg clone https://bitbucket.org/adam_novak/drl-graph-layout</action> + <!-- + TODO: We're supposed to copy the right Configuration.mk + file. Not doing so assumes our system is GNU. + --> + <action type="shell_command">hg up -r drl-graph-layout-1.1</action> + <action type="shell_command">make</action> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + <!-- + Now we can access DrL tools like truncate (at the expense of + GNU truncate) + --> + <!-- + TODO: report to Galaxy that comments as the last element of + a set_enviromnent action atag are not properly handeled. + See install_util.py line 435 in Galaxy revision 9d42f1e32efb + --> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> + This installs the latest DrL Graph Layout tool from Adam Novak's Bitbucket, because Shawn Martin has stopped maintaining it. + </readme> + </package> +</tool_dependency>