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annotate datamash-reverse.xml @ 7:48bbe512639e

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add datamash-reverse tool.
author Assaf Gordon <agordon@wi.mit.edu>
date Sat, 22 Nov 2014 20:39:44 -0500
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1 <tool id="DatamashReverse" name="Reverse" version="1.0.6">
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2 <description>columns in a tabular file</description>
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3
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4 <requirements>
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5 <requirement type="package" version="1.0.6">datamash</requirement>
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6 </requirements>
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7
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8 <command>
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9 datamash -W reverse &lt; $in_file &gt; $out_file
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10 </command>
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11 <inputs>
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12 <param format="tabular" name="in_file" type="data" label="Select Input Data" help=""/>
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13 </inputs>
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14 <outputs>
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15 <data format="tabular" name="out_file" />
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16 </outputs>
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17 <tests>
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18 <test>
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19 <param name="in_file" value="datamash_reverse_input.txt" />
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20 <output name="out_file" file="datamash_reverse_output.txt" />
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21 </test>
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22 </tests>
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23 <help>
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24
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25 .. class:: infomark
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26
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27 **TIP:** Input data must be TAB delimited. If the desired dataset does not appear in the input list, use *Text Manipulation-&gt;Convert* to convert it to **Tabular** type.
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28
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29 -----
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30
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31 **Syntax**
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32
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33 This tools reverses the order of columns in a tabular input file.
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34
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35 -----
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36
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37 **Example**
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38
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39 Input file::
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40
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41 Genes Sample Counts
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42 NOX1 A1 514
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43 DcP A2 542
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44 HH B3 490
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45
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46 Output file::
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47
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48 Counts Sample Genes
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49 514 A1 NOX1
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50 542 A2 DcP
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51 490 B3 HH
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52
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53 -----
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54
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55 **GNU Datamash** is a Free and Open Source Software, see more details on the Datamash_ Website.
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56
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57 **GNU Datamash** is also available as a command-line program, see http://www.gnu.org/software/datamash/download/ .
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58
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59 For more details about supported statistical operations, see Datamash_ website.
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60
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61 .. _Datamash: http://www.gnu.org/software/datamash/
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62
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63 </help>
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64 </tool>