Mercurial > repos > agordon > datamash_wrapper
annotate datamash-transpose.xml @ 11:687db8c37dcf default tip
remove leftover datamash.xml from merge
| author | Assaf Gordon <agordon@wi.mit.edu> |
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| date | Sat, 22 Nov 2014 21:17:57 -0500 |
| parents | b8e69214bfc6 |
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1 <tool id="DatamashTranspose" name="Transpose" version="1.0.6"> |
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2 <description>rows/columns in a tabular file</description> |
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3 |
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4 <requirements> |
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5 <requirement type="package" version="1.0.6">datamash</requirement> |
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6 </requirements> |
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7 |
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8 <command> |
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9 datamash -W transpose < $in_file > $out_file |
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10 </command> |
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11 <inputs> |
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12 <param format="tabular" name="in_file" type="data" label="Select Input Data" help=""/> |
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13 </inputs> |
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14 <outputs> |
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15 <data format="tabular" name="out_file" /> |
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16 </outputs> |
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17 <tests> |
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18 <test> |
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19 <param name="in_file" value="datamash_transpose_input.txt" /> |
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20 <output name="out_file" file="datamash_transpose_output.txt" /> |
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21 </test> |
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22 </tests> |
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23 <help> |
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24 |
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25 .. class:: infomark |
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26 |
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27 **TIP:** Input data must be TAB delimited. If the desired dataset does not appear in the input list, use *Text Manipulation->Convert* to convert it to **Tabular** type. |
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28 |
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29 ----- |
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30 |
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31 **Syntax** |
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32 |
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33 This tools transposes (swaps) rows/columns in a tabular input file. |
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34 |
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35 ----- |
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36 |
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37 **Example** |
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38 |
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39 Input file:: |
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40 |
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41 Genes NOX1 DcP HH |
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42 Sample A1 A2 B3 |
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43 Counts 514 542 490 |
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44 |
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45 Output file:: |
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46 |
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47 Genes Sample Counts |
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48 NOX1 A1 514 |
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49 DcP A2 542 |
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50 HH B3 490 |
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51 |
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52 |
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53 ----- |
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54 |
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55 **GNU Datamash** is a Free and Open Source Software, see more details on the Datamash_ Website. |
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56 |
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57 **GNU Datamash** is also available as a command-line program, see http://www.gnu.org/software/datamash/download/ . |
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58 |
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59 For more details about supported statistical operations, see Datamash_ website. |
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60 |
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61 .. _Datamash: http://www.gnu.org/software/datamash/ |
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62 |
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63 </help> |
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64 </tool> |