Mercurial > repos > agordon > datamash_wrapper

comparison datamash-reverse.xml @ 7:48bbe512639e

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
add datamash-reverse tool.
author Assaf Gordon <agordon@wi.mit.edu>
date Sat, 22 Nov 2014 20:39:44 -0500
parents
children
comparison
equal deleted inserted replaced
6:22080cbb0e2a 7:48bbe512639e
1 <tool id="DatamashReverse" name="Reverse" version="1.0.6">
2 <description>columns in a tabular file</description>
3
4 <requirements>
5 <requirement type="package" version="1.0.6">datamash</requirement>
6 </requirements>
7
8 <command>
9 datamash -W reverse &lt; $in_file &gt; $out_file
10 </command>
11 <inputs>
12 <param format="tabular" name="in_file" type="data" label="Select Input Data" help=""/>
13 </inputs>
14 <outputs>
15 <data format="tabular" name="out_file" />
16 </outputs>
17 <tests>
18 <test>
19 <param name="in_file" value="datamash_reverse_input.txt" />
20 <output name="out_file" file="datamash_reverse_output.txt" />
21 </test>
22 </tests>
23 <help>
24
25 .. class:: infomark
26
27 **TIP:** Input data must be TAB delimited. If the desired dataset does not appear in the input list, use *Text Manipulation-&gt;Convert* to convert it to **Tabular** type.
28
29 -----
30
31 **Syntax**
32
33 This tools reverses the order of columns in a tabular input file.
34
35 -----
36
37 **Example**
38
39 Input file::
40
41 Genes Sample Counts
42 NOX1 A1 514
43 DcP A2 542
44 HH B3 490
45
46 Output file::
47
48 Counts Sample Genes
49 514 A1 NOX1
50 542 A2 DcP
51 490 B3 HH
52
53 -----
54
55 **GNU Datamash** is a Free and Open Source Software, see more details on the Datamash_ Website.
56
57 **GNU Datamash** is also available as a command-line program, see http://www.gnu.org/software/datamash/download/ .
58
59 For more details about supported statistical operations, see Datamash_ website.
60
61 .. _Datamash: http://www.gnu.org/software/datamash/
62
63 </help>
64 </tool>