Mercurial > repos > agordon > datamash_wrapper
view datamash-transpose.xml @ 9:fecc95defba2
tool-deps.xml: update correct revision/name
author | Assaf Gordon <agordon@wi.mit.edu> |
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date | Sat, 22 Nov 2014 20:43:20 -0500 |
parents | b8e69214bfc6 |
children |
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<tool id="DatamashTranspose" name="Transpose" version="1.0.6"> <description>rows/columns in a tabular file</description> <requirements> <requirement type="package" version="1.0.6">datamash</requirement> </requirements> <command> datamash -W transpose < $in_file > $out_file </command> <inputs> <param format="tabular" name="in_file" type="data" label="Select Input Data" help=""/> </inputs> <outputs> <data format="tabular" name="out_file" /> </outputs> <tests> <test> <param name="in_file" value="datamash_transpose_input.txt" /> <output name="out_file" file="datamash_transpose_output.txt" /> </test> </tests> <help> .. class:: infomark **TIP:** Input data must be TAB delimited. If the desired dataset does not appear in the input list, use *Text Manipulation->Convert* to convert it to **Tabular** type. ----- **Syntax** This tools transposes (swaps) rows/columns in a tabular input file. ----- **Example** Input file:: Genes NOX1 DcP HH Sample A1 A2 B3 Counts 514 542 490 Output file:: Genes Sample Counts NOX1 A1 514 DcP A2 542 HH B3 490 ----- **GNU Datamash** is a Free and Open Source Software, see more details on the Datamash_ Website. **GNU Datamash** is also available as a command-line program, see http://www.gnu.org/software/datamash/download/ . For more details about supported statistical operations, see Datamash_ website. .. _Datamash: http://www.gnu.org/software/datamash/ </help> </tool>