Mercurial > repos > alenail > chipsequtil

comparison chipsequtil/map_to_known_genes.xml @ 4:0eaa8225a09a draft

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author alenail
date Mon, 04 Apr 2016 14:52:14 -0400
parents 4f66143b385a
children 124231ed2402
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3:7a910b2c72ff 4:0eaa8225a09a
29 <param name="dnst_win" type="integer" label="Downstream Window" help="Window width in base pairs to consider downstream region [default: %default]" optional="false" value="2500" /> 29 <param name="dnst_win" type="integer" label="Downstream Window" help="Window width in base pairs to consider downstream region [default: %default]" optional="false" value="2500" />
30 30
31 <param name="tss" checked="true" label="calculate downstream window from transcription start site instead of transcription end site" type="boolean" truevalue="--tss" falsevalue="" help="" /> 31 <param name="tss" checked="true" label="calculate downstream window from transcription start site instead of transcription end site" type="boolean" truevalue="--tss" falsevalue="" help="" />
32 32
33 <param name="peaks_fmt" type="select" label="Peaks Format" help="Format of peaks input file" optional="false"> 33 <param name="peaks_fmt" type="select" label="Peaks Format" help="Format of peaks input file" optional="false">
34 <option value="auto">auto</option>
35 <option value="MACS">MACS</option> 34 <option value="MACS">MACS</option>
36 <option selected="true" value="BED">BED</option> 35 <option selected="true" value="BED">BED</option>
37 </param> 36 </param>
38 37
39 <param name="detail" checked="false" label="Add extra fields to output" type="boolean" truevalue="--detail" falsevalue="" help="" /> 38 <param name="detail" checked="true" label="Add extra fields to output" type="boolean" truevalue="--detail" falsevalue="" help="" />
40 <param name="intergenic" checked="false" label="Write intergenic peaks to the gene file as well with None as gene ID" type="boolean" truevalue="--intergenic" falsevalue="" help="" /> 39 <param name="intergenic" checked="false" label="Write intergenic peaks to the gene file as well with None as gene ID" type="boolean" truevalue="--intergenic" falsevalue="" help="" />
41 </inputs> 40 </inputs>
42 <outputs> 41 <outputs>
43 <data format="txt" hidden="false" name="default"/> 42 <data format="txt" hidden="false" name="default"/>
44 </outputs> 43 </outputs>