Mercurial > repos > alenail > chipsequtil
comparison chipsequtil/pieplot_macs/pieplots_macs.xml @ 27:8cdddb76c44f draft
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| author | alenail |
|---|---|
| date | Wed, 13 Apr 2016 18:10:26 -0400 |
| parents | a5df36602f21 |
| children |
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| 26:5590ffd19524 | 27:8cdddb76c44f |
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| 2 <description> | 2 <description> |
| 3 Peaks are assigned to the closest gene and then categorized according to their location at different genomic regions (promoter, intron, exon, or after the gene). Sites >10kb away from any gene are considered intergenic. | 3 Peaks are assigned to the closest gene and then categorized according to their location at different genomic regions (promoter, intron, exon, or after the gene). Sites >10kb away from any gene are considered intergenic. |
| 4 </description> | 4 </description> |
| 5 <parallelism method="basic"></parallelism> | 5 <parallelism method="basic"></parallelism> |
| 6 <requirements> | 6 <requirements> |
| 7 <requirement type="package" version="1.2.1">matplotlib</requirement> | 7 <requirement type="package" version="0.14.1">pandas</requirement> |
| 8 <requirement type="package">pandas</requirement> | 8 <requirement type="package" version="1.4">matplotlib</requirement> |
| 9 </requirements> | 9 </requirements> |
| 10 <command interpreter="python"> | 10 <command interpreter="python"> |
| 11 pieplots_macs.py --genefile $genefile --peakfile $peakfile $MACS --outfile $out | 11 pieplots_macs.py --genefile $genefile --peakfile $peakfile $MACS --outfile $out |
| 12 </command> | 12 </command> |
| 13 <inputs> | 13 <inputs> |