Mercurial > repos > alenail > chipsequtil

changeset 10:a92644537c7d draft

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Uploaded
author alenail
date Mon, 04 Apr 2016 15:05:42 -0400
parents 1c6c8591f760
children 45d2e58bcaf8
files chipsequtil/._map_to_known_genes.py chipsequtil/._map_to_known_genes.xml chipsequtil/map_to_known_genes.xml
diffstat 3 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
Binary file chipsequtil/._map_to_known_genes.py has changed
Binary file chipsequtil/._map_to_known_genes.xml has changed
--- a/chipsequtil/map_to_known_genes.xml	Mon Apr 04 15:02:08 2016 -0400
+++ b/chipsequtil/map_to_known_genes.xml	Mon Apr 04 15:05:42 2016 -0400
@@ -10,10 +10,10 @@
   <command interpreter="python">
     map_to_known_genes.py
       $tss
+      --peaks-format=$peaks_fmt
       --upstream-window=$upst_win
       --downstream-window=$dnst_win
-      --map-output=$peaksOutput
-      --peaks-format=$peaks_fmt
+      --map-output="$peaksOutput"
       $detail
       $intergenic
       $knownGeneFile $knownGeneRef $macsPeaksFile
@@ -38,7 +38,7 @@
     <param name="intergenic" checked="false" label="Write intergenic peaks to the gene file as well with None as gene ID" type="boolean" truevalue="--intergenic" falsevalue="" help="" />
   </inputs>
   <outputs>
-    <data format="txt" hidden="false" name="peaksOutput"/>
+    <data name="peaksOutput" format="txt" hidden="false" />
   </outputs>
   <help></help>
 </tool>