# HG changeset patch
# User alenail
# Date 1460670312 14400
# Node ID d7baa700a9306cb22cba515aead0f141e8ac83fd
# Parent 01748da366c35a32da4ed7a28243c218087c1542
Uploaded
diff -r 01748da366c3 -r d7baa700a930 pieplot_macs/pieplots_macs.py
--- a/pieplot_macs/pieplots_macs.py Thu Apr 14 17:40:18 2016 -0400
+++ b/pieplot_macs/pieplots_macs.py Thu Apr 14 17:45:12 2016 -0400
@@ -41,7 +41,16 @@
chrom = words[2]
- if not macsFlag:
+ if macsFlag:
+ print "MacsFlag off"
+ start = int(words[3])-1
+ dist = abs(int(words[12]))
+ maptype = words[14]
+ if maptype == 'gene':
+ maptype = words[15]
+
+ else:
+ print "macsFlag on"
try:
start = int(words[3])
dist = abs(int(words[15]))
@@ -51,13 +60,8 @@
except:
pass
- else:
- start = int(words[3])-1
- dist = abs(int(words[12]))
- maptype = words[14]
- if maptype == 'gene':
- maptype = words[15]
-
+ print "dist:"
+ print dist
if chrom not in peaks:
#new chrom
@@ -120,6 +124,8 @@
args=parser.parse_args()
+ print args.MACS
+
map_peaks(args.genefile, args.peakfile, args.outfile, args.MACS)
diff -r 01748da366c3 -r d7baa700a930 pieplot_macs/pieplots_macs.xml
--- a/pieplot_macs/pieplots_macs.xml Thu Apr 14 17:40:18 2016 -0400
+++ b/pieplot_macs/pieplots_macs.xml Thu Apr 14 17:45:12 2016 -0400
@@ -18,5 +18,5 @@
- help
+