Mercurial > repos > alenail > pieplot_macs
changeset 7:b9b2be216c05 draft
Uploaded
author | alenail |
---|---|
date | Thu, 14 Apr 2016 18:00:18 -0400 |
parents | d7baa700a930 |
children | 37b6e6c43ef8 |
files | pieplot_macs/pieplots_macs.py |
diffstat | 1 files changed, 6 insertions(+), 3 deletions(-) [+] |
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--- a/pieplot_macs/pieplots_macs.py Thu Apr 14 17:45:12 2016 -0400 +++ b/pieplot_macs/pieplots_macs.py Thu Apr 14 18:00:18 2016 -0400 @@ -40,28 +40,31 @@ if words[0] == 'knownGeneID': continue chrom = words[2] - if macsFlag: - print "MacsFlag off" + print "macsflag on" start = int(words[3])-1 dist = abs(int(words[12])) + print dist maptype = words[14] if maptype == 'gene': maptype = words[15] else: - print "macsFlag on" + print "macsflag off" try: start = int(words[3]) dist = abs(int(words[15])) + print dist maptype = words[16] if maptype == 'gene': maptype = words[17] except: + print 'trigger except' pass print "dist:" print dist + print "that was dist" if chrom not in peaks: #new chrom