Mercurial > repos > alenail > pieplot_macs
changeset 16:8dae9fdd2afe draft default tip
Uploaded
| author | alenail |
|---|---|
| date | Fri, 15 Apr 2016 11:51:20 -0400 |
| parents | 4ec317901ac3 |
| children | |
| files | pieplot_macs/pieplots_macs.py |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/pieplot_macs/pieplots_macs.py Fri Apr 15 11:46:20 2016 -0400 +++ b/pieplot_macs/pieplots_macs.py Fri Apr 15 11:51:20 2016 -0400 @@ -106,7 +106,7 @@ # df.to_csv(dfFileName, sep=',') #plt.title('MACS peaks in %s'%(name)) plt.figtext(.5, .1, 'Total: %i'%totalpks, ha='center') - fig.savefig(outfile) + fig.savefig(outfile, format='pdf') def main(): usage = "usage: %prog --genefile MACSoutfile_genes.txt --peakfile MACSoutfile_peaks.bed --outfile MACSdirectory/piechart.pdf" @@ -114,7 +114,7 @@ parser.add_argument("--genefile", dest="genefile", help="Path to file MACS_mfold10,30_pval1e-5_genes.txt") parser.add_argument("--peakfile", dest="peakfile", help="Path to file MACS_mfold10,30_pval1e-5_peaks.bed") parser.add_argument("--outfile", dest="outfile", default="MACS_piechart.pdf", help="Path to pdf file where you want to store the piechart") - parser.add_argument('--MACS',action='store_true',default=False,help='Set this value if you have MACS peaks') + parser.add_argument('--MACS', action='store_true', default=False, help='Set this value if you have MACS peaks') args=parser.parse_args()