annotate test-data/BGC0001866.sideload.json @ 20:64b724dd8d04 draft

Regenerate Galaxy test files with Pyrodigal `v2.1.0`
author althonos
date Mon, 27 Mar 2023 13:32:49 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
20
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
1 {
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
2 "records": [
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
3 {
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
4 "name": "BGC0001866.1",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
5 "subregions": [
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
6 {
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
7 "details": {
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
8 "alkaloid_probability": "0.010",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
9 "average_p": "0.996",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
10 "max_p": "1.000",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
11 "nrp_probability": "0.140",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
12 "polyketide_probability": "0.960",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
13 "ripp_probability": "0.000",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
14 "saccharide_probability": "0.000",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
15 "terpene_probability": "0.010"
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
16 },
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
17 "end": 32979,
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
18 "label": "Polyketide",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
19 "start": 347
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
20 }
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
21 ]
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
22 }
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
23 ],
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
24 "tool": {
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
25 "configuration": {
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
26 "cds": "3",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
27 "e-filter": "None",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
28 "edge-distance": "0",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
29 "mask": "False",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
30 "no-pad": "False",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
31 "p-filter": "1e-09",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
32 "postproc": "'gecco'",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
33 "threshold": "0.8"
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
34 },
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
35 "description": "Biosynthetic Gene Cluster prediction with Conditional Random Fields.",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
36 "name": "GECCO",
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
37 "version": "0.9.6"
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
38 }
64b724dd8d04 Regenerate Galaxy test files with Pyrodigal `v2.1.0`
althonos
parents:
diff changeset
39 }