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comparison CHANGELOG.md @ 12:e6597056a493 draft

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"Release v0.9.1-alpha3"
author althonos
date Mon, 28 Mar 2022 15:41:47 +0000
parents 40a525d0e1fe
children fde43648cba0
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11:40a525d0e1fe 12:e6597056a493
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4 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/) 4 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
5 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html). 5 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
6 6
7 ## [Unreleased] 7 ## [Unreleased]
8 [Unreleased]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha2...master 8 [Unreleased]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha3...master
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10 ## [v0.9.1-alpha3] - 2022-03-23
11 [v0.9.1-alpha3]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha2...v0.9.1-alpha3
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13 ### Added
14 - `gecco.model.GeneTable` class to store gene coordinates independently of protein domains.
15
16 ### Changed
17 - Refactored implementation of `load` and `dump` methods for `Table` classes into a dedicated base class.
18 - `gecco run` and `gecco annotate` now output a gene table in addition to the feature and cluster tables.
19 - `gecco train` expects a gene table instead of a GFF file for the gene coordinates.
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10 ## [v0.9.1-alpha2] - 2022-03-23 21 ## [v0.9.1-alpha2] - 2022-03-23
11 [v0.9.1-alpha1]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha1...v0.9.1-alpha2 22 [v0.9.1-alpha2]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha1...v0.9.1-alpha2
12 23
13 ### Fixed 24 ### Fixed
14 - `TypeClassifier.trained` not being able to read unknown types from type tables. 25 - `TypeClassifier.trained` not being able to read unknown types from type tables.
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16 ## [v0.9.1-alpha1] - 2022-03-20 27 ## [v0.9.1-alpha1] - 2022-03-20