Mercurial > repos > althonos > gecco
diff test-data/BGC0001866.1_cluster_1.gbk @ 14:56b924f62165 draft
"Update tests files for Galaxy tool wrapper"
| author | althonos |
|---|---|
| date | Tue, 05 Apr 2022 23:18:49 +0000 |
| parents | d64fe390f3c9 |
| children | cc91d730cc4f |
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--- a/test-data/BGC0001866.1_cluster_1.gbk Thu Mar 31 18:00:15 2022 +0000 +++ b/test-data/BGC0001866.1_cluster_1.gbk Tue Apr 05 23:18:49 2022 +0000 @@ -1,4 +1,4 @@ -LOCUS BGC0001866.1_cluster_1 32633 bp DNA linear UNK 21-NOV-2021 +LOCUS BGC0001866.1_cluster_1 32633 bp DNA linear UNK 06-APR-2022 DEFINITION BGC0001866.1 Byssochlamys spectabilis strain CBS 101075 chromosome Unknown C8Q69scaffold_14, whole genome shotgun sequence. ACCESSION BGC0001866.1_cluster_1 @@ -15,15 +15,15 @@ JOURNAL bioRxiv (2021.05.03.442509) REMARK doi:10.1101/2021.05.03.442509 COMMENT ##GECCO-Data-START## - version :: GECCO v0.8.10 - creation_date :: 2021-11-21T16:33:58.470847 + version :: GECCO v0.9.1 + creation_date :: 2022-04-06T01:08:36.965708 biosyn_class :: Polyketide - alkaloid_probability :: 0.0 - polyketide_probability :: 0.98 + alkaloid_probability :: 0.010000000000000009 + polyketide_probability :: 0.96 ripp_probability :: 0.0 saccharide_probability :: 0.0 - terpene_probability :: 0.0 - nrp_probability :: 0.09999999999999998 + terpene_probability :: 0.010000000000000009 + nrp_probability :: 0.14 ##GECCO-Data-END## FEATURES Location/Qualifiers CDS complement(1..1143) @@ -41,7 +41,7 @@ /inference="protein motif" /db_xref="PFAM:PF00394" /db_xref="InterPro:IPR001117" - /note="e-value: 2.1941888078432915e-08" + /note="e-value: 2.262067179461254e-08" /note="p-value: 8.178117062405111e-12" /function="Multicopper oxidase" /standard_name="PF00394" @@ -49,7 +49,7 @@ /inference="protein motif" /db_xref="PFAM:PF07731" /db_xref="InterPro:IPR011706" - /note="e-value: 3.9374169295176556e-23" + /note="e-value: 4.059222969454281e-23" /note="p-value: 1.467542649838858e-26" /function="Multicopper oxidase" /standard_name="PF07731" @@ -93,7 +93,7 @@ /inference="protein motif" /db_xref="PFAM:PF00891" /db_xref="InterPro:IPR001077" - /note="e-value: 4.743887678074703e-16" + /note="e-value: 4.890642309934635e-16" /note="p-value: 1.7681280946979883e-19" /function="O-methyltransferase domain" /standard_name="PF00891" @@ -108,7 +108,7 @@ /inference="protein motif" /db_xref="PFAM:PF00135" /db_xref="InterPro:IPR002018" - /note="e-value: 4.674605664377319e-21" + /note="e-value: 4.819217021121008e-21" /note="p-value: 1.7423055029360116e-24" /function="Carboxylesterase family" /standard_name="PF00135" @@ -123,7 +123,7 @@ /inference="protein motif" /db_xref="PFAM:PF00135" /db_xref="InterPro:IPR002018" - /note="e-value: 3.9706994470948554e-30" + /note="e-value: 4.0935350990176556e-30" /note="p-value: 1.4799476135277136e-33" /function="Carboxylesterase family" /standard_name="PF00135" @@ -140,7 +140,7 @@ /inference="protein motif" /db_xref="PFAM:PF00135" /db_xref="InterPro:IPR002018" - /note="e-value: 1.4185801852307574e-15" + /note="e-value: 1.4624647008379705e-15" /note="p-value: 5.287291037013632e-19" /function="Carboxylesterase family" /standard_name="PF00135" @@ -160,7 +160,7 @@ /inference="protein motif" /db_xref="PFAM:PF13434" /db_xref="InterPro:IPR025700" - /note="e-value: 5.777178703900199e-08" + /note="e-value: 5.955898730893757e-08" /note="p-value: 2.153253337271785e-11" /function="L-lysine 6-monooxygenase (NADPH-requiring)" /standard_name="PF13434" @@ -168,7 +168,7 @@ /inference="protein motif" /db_xref="PFAM:PF00743" /db_xref="InterPro:IPR020946" - /note="e-value: 5.089108077410868e-07" + /note="e-value: 5.246542281818287e-07" /note="p-value: 1.8967976434628658e-10" /function="Flavin-binding monooxygenase-like" /standard_name="PF00743" @@ -202,7 +202,7 @@ /inference="protein motif" /db_xref="PFAM:PF07690" /db_xref="InterPro:IPR011701" - /note="e-value: 5.839871260376694e-37" + /note="e-value: 6.020530714201243e-37" /note="p-value: 2.1766199255969786e-40" /function="Major Facilitator Superfamily" /standard_name="PF07690" @@ -210,7 +210,7 @@ /inference="protein motif" /db_xref="PFAM:PF06609" /db_xref="InterPro:IPR010573" - /note="e-value: 9.543170598318239e-09" + /note="e-value: 9.83839354265682e-09" /note="p-value: 3.55690294383833e-12" /function="Fungal trichothecene efflux pump (TRI12)" /standard_name="PF06609" @@ -235,8 +235,8 @@ /inference="protein motif" /db_xref="PFAM:PF08493" /db_xref="InterPro:IPR013700" - /note="e-value: 2.6165794251055913e-17" - /note="p-value: 9.752439154325723e-21" + /note="e-value: 2.686865976406516e-17" + /note="p-value: 9.713904470016327e-21" /function="Aflatoxin regulatory protein" /standard_name="PF08493" CDS 16827..18797 @@ -259,7 +259,7 @@ /inference="protein motif" /db_xref="PFAM:PF00109" /db_xref="InterPro:IPR014030" - /note="e-value: 9.025888536170949e-60" + /note="e-value: 9.30510909096118e-60" /note="p-value: 3.364103069761815e-63" /function="Beta-ketoacyl synthase, N-terminal domain" /standard_name="PF00109" @@ -267,23 +267,23 @@ /inference="protein motif" /db_xref="PFAM:PF02801" /db_xref="InterPro:IPR014031" - /note="e-value: 2.2171445990751238e-35" + /note="e-value: 2.2857331200304854e-35" /note="p-value: 8.263677223537547e-39" /function="Beta-ketoacyl synthase, C-terminal domain" /standard_name="PF02801" - misc_feature 17937..18287 + misc_feature 17937..18290 /inference="protein motif" /db_xref="PFAM:PF16197" /db_xref="InterPro:IPR032821" - /note="e-value: 3.8698172759236842e-25" - /note="p-value: 1.4423471024687604e-28" + /note="e-value: 4.800730099641783e-25" + /note="p-value: 1.7356218726109122e-28" /function="Ketoacyl-synthetase C-terminal extension" /standard_name="PF16197" misc_feature 18360..18770 /inference="protein motif" /db_xref="PFAM:PF00698" /db_xref="InterPro:IPR014043" - /note="e-value: 1.0799913424517567e-26" + /note="e-value: 1.113401436161595e-26" /note="p-value: 4.025312495161225e-30" /function="Acyl transferase domain" /standard_name="PF00698" @@ -314,7 +314,7 @@ /inference="protein motif" /db_xref="PFAM:PF00698" /db_xref="InterPro:IPR014043" - /note="e-value: 2.639223271303753e-16" + /note="e-value: 2.7208690154402465e-16" /note="p-value: 9.836836642950999e-20" /function="Acyl transferase domain" /standard_name="PF00698" @@ -322,14 +322,14 @@ /inference="protein motif" /db_xref="PFAM:PF14765" /db_xref="InterPro:IPR020807" - /note="e-value: 2.520598829779557e-60" + /note="e-value: 2.598574865139864e-60" /note="p-value: 9.394703055458656e-64" /function="Polyketide synthase dehydratase" /standard_name="PF14765" misc_feature 20786..21256 /inference="protein motif" /db_xref="PFAM:PF13489" - /note="e-value: 1.0131254482174088e-12" + /note="e-value: 1.04446701072283e-12" /note="p-value: 3.776091868123029e-16" /function="Methyltransferase domain" /standard_name="PF13489" @@ -337,23 +337,23 @@ /inference="protein motif" /db_xref="PFAM:PF13847" /db_xref="InterPro:IPR025714" - /note="e-value: 8.939870258494623e-11" - /note="p-value: 3.332042586095648e-14" + /note="e-value: 8.752004453621267e-11" + /note="p-value: 3.1641375465008194e-14" /function="Methyltransferase domain" /standard_name="PF13847" misc_feature 20804..21097 /inference="protein motif" /db_xref="PFAM:PF13649" /db_xref="InterPro:IPR041698" - /note="e-value: 2.319131521369124e-13" - /note="p-value: 8.643799930559537e-17" + /note="e-value: 2.4253465299984994e-13" + /note="p-value: 8.76842563267715e-17" /function="Methyltransferase domain" /standard_name="PF13649" misc_feature 20807..21103 /inference="protein motif" /db_xref="PFAM:PF08242" /db_xref="InterPro:IPR013217" - /note="e-value: 3.6288099491186147e-22" + /note="e-value: 3.7410690716593694e-22" /note="p-value: 1.3525195486837923e-25" /function="Methyltransferase domain" /standard_name="PF08242" @@ -361,7 +361,7 @@ /inference="protein motif" /db_xref="PFAM:PF08241" /db_xref="InterPro:IPR013216" - /note="e-value: 5.245291385894328e-12" + /note="e-value: 5.4075572021556884e-12" /note="p-value: 1.9550098344742185e-15" /function="Methyltransferase domain" /standard_name="PF08241" @@ -376,7 +376,7 @@ /inference="protein motif" /db_xref="PFAM:PF00107" /db_xref="InterPro:IPR013149" - /note="e-value: 1.0960342036668699e-15" + /note="e-value: 1.1299405916297285e-15" /note="p-value: 4.085106983476965e-19" /function="Zinc-binding dehydrogenase" /standard_name="PF00107" @@ -396,7 +396,7 @@ /inference="protein motif" /db_xref="PFAM:PF08659" /db_xref="InterPro:IPR013968" - /note="e-value: 1.5141662612831146e-61" + /note="e-value: 1.5610077818520667e-61" /note="p-value: 5.643556695054471e-65" /function="KR domain" /standard_name="PF08659" @@ -404,7 +404,7 @@ /inference="protein motif" /db_xref="PFAM:PF00106" /db_xref="InterPro:IPR002347" - /note="e-value: 1.1379002942545491e-07" + /note="e-value: 1.1731018314976082e-07" /note="p-value: 4.2411490654288077e-11" /function="short chain dehydrogenase" /standard_name="PF00106" @@ -412,7 +412,7 @@ /inference="protein motif" /db_xref="PFAM:PF00550" /db_xref="InterPro:IPR009081" - /note="e-value: 3.359618716013185e-10" + /note="e-value: 3.463550267794435e-10" /note="p-value: 1.2521873708584363e-13" /function="Phosphopantetheine attachment site" /standard_name="PF00550" @@ -426,8 +426,8 @@ /inference="protein motif" /db_xref="PFAM:PF16073" /db_xref="InterPro:IPR032088" - /note="e-value: 1.3071857188363548e-23" - /note="p-value: 4.872104803713585e-27" + /note="e-value: 9.422238725791962e-24" + /note="p-value: 3.406449286258844e-27" /function="Starter unit:ACP transacylase in aflatoxin biosynthesis" /standard_name="PF16073" @@ -459,8 +459,8 @@ /inference="protein motif" /db_xref="PFAM:PF16073" /db_xref="InterPro:IPR032088" - /note="e-value: 8.208876065249628e-11" - /note="p-value: 3.059588544632735e-14" + /note="e-value: 4.380197593141013e-11" + /note="p-value: 1.5835855362042708e-14" /function="Starter unit:ACP transacylase in aflatoxin biosynthesis" /standard_name="PF16073" @@ -468,7 +468,7 @@ /inference="protein motif" /db_xref="PFAM:PF00109" /db_xref="InterPro:IPR014030" - /note="e-value: 2.667462237983852e-82" + /note="e-value: 2.7499815692371726e-82" /note="p-value: 9.942088102809735e-86" /function="Beta-ketoacyl synthase, N-terminal domain" /standard_name="PF00109" @@ -476,7 +476,7 @@ /inference="protein motif" /db_xref="PFAM:PF02801" /db_xref="InterPro:IPR014031" - /note="e-value: 2.4031043351141288e-34" + /note="e-value: 2.4774456171918303e-34" /note="p-value: 8.956780973217029e-38" /function="Beta-ketoacyl synthase, C-terminal domain" /standard_name="PF02801" @@ -484,15 +484,15 @@ /inference="protein motif" /db_xref="PFAM:PF16197" /db_xref="InterPro:IPR032821" - /note="e-value: 2.535893425129411e-07" - /note="p-value: 9.451708628883381e-11" + /note="e-value: 8.475099126640419e-07" + /note="p-value: 3.0640271607521397e-10" /function="Ketoacyl-synthetase C-terminal extension" /standard_name="PF16197" misc_feature 28322..29233 /inference="protein motif" /db_xref="PFAM:PF00698" /db_xref="InterPro:IPR014043" - /note="e-value: 4.597134671955754e-38" + /note="e-value: 4.739349423268586e-38" /note="p-value: 1.7134307387088164e-41" /function="Acyl transferase domain" /standard_name="PF00698" @@ -509,7 +509,7 @@ /inference="protein motif" /db_xref="PFAM:PF14765" /db_xref="InterPro:IPR020807" - /note="e-value: 7.778696660229127e-11" + /note="e-value: 8.019334685871699e-11" /note="p-value: 2.8992533209948296e-14" /function="Polyketide synthase dehydratase" /standard_name="PF14765" @@ -533,7 +533,7 @@ /inference="protein motif" /db_xref="PFAM:PF00550" /db_xref="InterPro:IPR009081" - /note="e-value: 5.884377030377924e-14" + /note="e-value: 6.066413293337807e-14" /note="p-value: 2.193207987468477e-17" /function="Phosphopantetheine attachment site" /standard_name="PF00550" @@ -541,7 +541,7 @@ /inference="protein motif" /db_xref="PFAM:PF00550" /db_xref="InterPro:IPR009081" - /note="e-value: 3.9212317886052276e-10" + /note="e-value: 4.042537132792419e-10" /note="p-value: 1.461510170930014e-13" /function="Phosphopantetheine attachment site" /standard_name="PF00550" @@ -549,7 +549,7 @@ /inference="protein motif" /db_xref="PFAM:PF00550" /db_xref="InterPro:IPR009081" - /note="e-value: 1.367829688372301e-08" + /note="e-value: 1.4101442109719659e-08" /note="p-value: 5.098135252971677e-12" /function="Phosphopantetheine attachment site" /standard_name="PF00550" @@ -557,7 +557,7 @@ /inference="protein motif" /db_xref="PFAM:PF00975" /db_xref="InterPro:IPR001031" - /note="e-value: 6.711355516947163e-24" + /note="e-value: 6.91897478936856e-24" /note="p-value: 2.5014370171252933e-27" /function="Thioesterase domain" /standard_name="PF00975"