Mercurial > repos > althonos > gecco
diff test-data/BGC0001866.1_cluster_1.gbk @ 20:64b724dd8d04 draft
Regenerate Galaxy test files with Pyrodigal `v2.1.0`
| author | althonos |
|---|---|
| date | Mon, 27 Mar 2023 13:32:49 +0000 |
| parents | cc91d730cc4f |
| children |
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--- a/test-data/BGC0001866.1_cluster_1.gbk Mon Jan 16 18:35:56 2023 +0000 +++ b/test-data/BGC0001866.1_cluster_1.gbk Mon Mar 27 13:32:49 2023 +0000 @@ -1,4 +1,4 @@ -LOCUS BGC0001866.1_cluster_1 32633 bp DNA linear UNK 16-JAN-2023 +LOCUS BGC0001866.1_cluster_1 32633 bp DNA linear UNK 27-MAR-2023 DEFINITION BGC0001866.1 Byssochlamys spectabilis strain CBS 101075 chromosome Unknown C8Q69scaffold_14, whole genome shotgun sequence. ACCESSION BGC0001866.1_cluster_1 @@ -16,7 +16,7 @@ REMARK doi:10.1101/2021.05.03.442509 COMMENT ##GECCO-Data-START## version :: GECCO v0.9.6 - creation_date :: 2023-01-16T17:20:45.175113 + creation_date :: 2023-03-27T15:09:19.052491 cluster_type :: Polyketide alkaloid_probability :: 0.010 nrp_probability :: 0.140 @@ -27,7 +27,7 @@ ##GECCO-Data-END## FEATURES Location/Qualifiers CDS complement(1..1143) - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_1" /translation="MWIYEVDGHYIEPRRADTFLIWAGERYSAMIRLDKKPMDYSIRVP @@ -61,7 +61,7 @@ /function="Multicopper oxidase, C-terminal" /standard_name="PF07731" CDS 1179..1670 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_2" /translation="MSSLRSSSHSPSGLPGQPRLPLLDRSREHSLPGDRAGWRTRSRLR @@ -73,7 +73,7 @@ /ApEinfo_fwdcolor="#808080" /ApEinfo_revcolor="#808080" CDS complement(2167..2376) - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_3" /translation="MPAYLLLLACNVLLVLGAHVQRELVLTWEEGAPNGQSRQMIKTNG @@ -83,7 +83,7 @@ /ApEinfo_fwdcolor="#808080" /ApEinfo_revcolor="#808080" CDS 2559..3032 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_4" /translation="MLFNSEVGVEEHVVLWSFQETTSITMAEEIKLTPLETFAQAISAS @@ -94,7 +94,7 @@ /ApEinfo_fwdcolor="#808080" /ApEinfo_revcolor="#808080" CDS 3007..3576 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_5" /translation="MQGTRTYYELATEAKVPLHQLQSIARMAITGSFLREPEPNIVAHS @@ -106,7 +106,7 @@ /ApEinfo_fwdcolor="#808080" /ApEinfo_revcolor="#808080" CDS 3600..4043 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_6" /translation="MVTSTSKDNREKTPLPETVASRISFESHDFFKPQPVQNADVYLLR @@ -126,7 +126,7 @@ /function="O-methyltransferase domain" /standard_name="PF00891" CDS 4337..4792 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_7" /translation="MTQIVFGIAPTLLKTFSHLTALDLWRPSAPYVFDPVTSSTYLGTI @@ -145,7 +145,7 @@ /function="Carboxylesterase, type B" /standard_name="PF00135" CDS 5038..5466 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_8" /translation="MQDQRLGIEWIKNHISAFGGDPDNITLFGEDEGATYIALHILSNH @@ -164,7 +164,7 @@ /function="Carboxylesterase, type B" /standard_name="PF00135" CDS 5477..6253 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_9" /translation="MPAVDGYMIPDEPSNLLSRGQVPANISILAGWTRDESSMSVPTSI @@ -185,7 +185,7 @@ /function="Carboxylesterase, type B" /standard_name="PF00135" CDS 7412..8683 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_10" /translation="MTGARFDESDHKWTVEGINGSHGTIRIRCRWYILALGFASKPYIP @@ -222,7 +222,7 @@ /function="Flavin monooxygenase-like" /standard_name="PF00743" CDS 9454..10038 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_11" /translation="MCRGRLTRTVDERGIVSTESAHAAQRHHLASHVLDARFAGSIARL @@ -234,7 +234,7 @@ /ApEinfo_fwdcolor="#808080" /ApEinfo_revcolor="#808080" CDS 10763..11191 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_12" /translation="MRAGQLVPLVSTPTPSCLALQIVFCCCSTFLSDPLVLQNHRKMAD @@ -245,7 +245,7 @@ /ApEinfo_fwdcolor="#808080" /ApEinfo_revcolor="#808080" CDS 11204..12316 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_13" /translation="MLVVAIPQITDHFNSIDDIGWYGSAYLLTFCAFQLLFGKIYSFYN @@ -280,7 +280,7 @@ /function="Major facilitator transporter Str1/Tri12-like" /standard_name="PF06609" CDS 12335..12781 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_14" /translation="MQQASLAAQTVLPKPDAPIGISLIFFSQSLGGSVFLAVDDSIYSN @@ -291,7 +291,7 @@ /ApEinfo_fwdcolor="#808080" /ApEinfo_revcolor="#808080" CDS 14574..15566 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_15" /translation="MTFEEMLSRPSPPPFAGPSHNSNRPTNMASTNQDQYYHDKGKHGE @@ -317,7 +317,7 @@ /function="Aflatoxin regulatory protein" /standard_name="PF08493" CDS 16827..18797 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_16" /translation="MAICGIAVRLPGGISNDAQLWDFLLAKRDARSQVPGSRYNISGYH @@ -369,7 +369,7 @@ /function="Acyl transferase" /standard_name="PF00698" CDS 18806..22078 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_17" /translation="MVVACENSPSSVTISGDIDQVQYVMQEISLAHPEILCRQIKSDTA @@ -451,7 +451,7 @@ /function="Methyltransferase type 11" /standard_name="PF08241" CDS 22416..22889 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_18" /translation="MQTVLINSASDGVGLAAIQISKMIGATIYATVIGEDKVEYLTASH @@ -470,7 +470,7 @@ /function="Alcohol dehydrogenase-like, C-terminal" /standard_name="PF00107" CDS 22922..24277 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_19" /translation="MELYKQGHIQPITPVKTFTATDIRQCFDYMQSGQHIGQLRLSLKS @@ -510,7 +510,7 @@ /function="Phosphopantetheine binding ACP domain" /standard_name="PF00550" CDS 25423..25710 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_20" /translation="MAQKLRFYLFGDQTYDYDEQLRALLTSHDPVVRSFLERAYYTLRA @@ -528,7 +528,7 @@ /function="Starter unit:ACP transacylase" /standard_name="PF16073" CDS 26198..29653 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_21" /translation="MSRPYISAYASGGVTISGPPSVLAELRNTPGLSKLRAKDIPIHAP @@ -596,7 +596,7 @@ /function="Acyl transferase" /standard_name="PF00698" CDS 29804..30544 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_22" /translation="MVIEKALMPLNAGPQLLRVTASLIWSEKEASVRFYSVDVRRPSSK @@ -617,7 +617,7 @@ /function="Polyketide synthase, dehydratase domain" /standard_name="PF14765" CDS 30591..32633 - /inference="ab initio prediction:Pyrodigal:2.0.4" + /inference="ab initio prediction:Pyrodigal:2.1.0" /transl_table=11 /locus_tag="BGC0001866.1_23" /translation="MLTTFQIQGVPRRVLRYILQSSAKTTQTATSSVPAPSQAPVMVPQ