Mercurial > repos > althonos > gecco
diff test-data/BGC0001866.1_cluster_1.gbk @ 19:cc91d730cc4f draft
Fix syntax of Galaxy script for GECCO
| author | althonos |
|---|---|
| date | Mon, 16 Jan 2023 18:35:56 +0000 |
| parents | 56b924f62165 |
| children | 64b724dd8d04 |
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--- a/test-data/BGC0001866.1_cluster_1.gbk Wed Aug 10 12:36:38 2022 +0000 +++ b/test-data/BGC0001866.1_cluster_1.gbk Mon Jan 16 18:35:56 2023 +0000 @@ -1,4 +1,4 @@ -LOCUS BGC0001866.1_cluster_1 32633 bp DNA linear UNK 06-APR-2022 +LOCUS BGC0001866.1_cluster_1 32633 bp DNA linear UNK 16-JAN-2023 DEFINITION BGC0001866.1 Byssochlamys spectabilis strain CBS 101075 chromosome Unknown C8Q69scaffold_14, whole genome shotgun sequence. ACCESSION BGC0001866.1_cluster_1 @@ -15,19 +15,19 @@ JOURNAL bioRxiv (2021.05.03.442509) REMARK doi:10.1101/2021.05.03.442509 COMMENT ##GECCO-Data-START## - version :: GECCO v0.9.1 - creation_date :: 2022-04-06T01:08:36.965708 - biosyn_class :: Polyketide - alkaloid_probability :: 0.010000000000000009 - polyketide_probability :: 0.96 - ripp_probability :: 0.0 - saccharide_probability :: 0.0 - terpene_probability :: 0.010000000000000009 - nrp_probability :: 0.14 + version :: GECCO v0.9.6 + creation_date :: 2023-01-16T17:20:45.175113 + cluster_type :: Polyketide + alkaloid_probability :: 0.010 + nrp_probability :: 0.140 + polyketide_probability :: 0.960 + ripp_probability :: 0.000 + saccharide_probability :: 0.000 + terpene_probability :: 0.010 ##GECCO-Data-END## FEATURES Location/Qualifiers CDS complement(1..1143) - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_1" /translation="MWIYEVDGHYIEPRRADTFLIWAGERYSAMIRLDKKPMDYSIRVP @@ -37,98 +37,134 @@ QPESFNMVNPPYRDTFLTEFTGAMWVVLRYQVTSPGAWLLHCHFEMHLDNGMAMAILDG VDKWPHVPPEYTQGFHGFREHELPGPAGFWGLVSKILRPESLVWAGGAAVVLLSLFIGG LWRLWQRRMQGTYYVLSQEDERDRFSMDKEAWKSEETKRM*" - misc_feature 1..189 + /function="binding" + /function="catalytic activity" + /colour="129 14 21" + /ApEinfo_fwdcolor="#810e15" + /ApEinfo_revcolor="#810e15" + misc_feature 955..1143 /inference="protein motif" /db_xref="PFAM:PF00394" /db_xref="InterPro:IPR001117" /note="e-value: 2.262067179461254e-08" /note="p-value: 8.178117062405111e-12" - /function="Multicopper oxidase" + /function="Multicopper oxidase, type 1" /standard_name="PF00394" - misc_feature 448..843 + misc_feature 301..696 /inference="protein motif" /db_xref="PFAM:PF07731" /db_xref="InterPro:IPR011706" + /db_xref="GO:0005507" + /db_xref="GO:0016491" /note="e-value: 4.059222969454281e-23" /note="p-value: 1.467542649838858e-26" - /function="Multicopper oxidase" + /function="Multicopper oxidase, C-terminal" /standard_name="PF07731" CDS 1179..1670 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_2" /translation="MSSLRSSSHSPSGLPGQPRLPLLDRSREHSLPGDRAGWRTRSRLR ATDLLSMVRMGSTYTIIRDMNYTDDESPGRSPFVCDSVIRPALVHERDLLVNKPLMART IDAPFAVEKNTIDATDFISQSTRNVLISVHWNHTRSAVGCLHLLLYTGSSCSSPSQKAS *" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" CDS complement(2167..2376) - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_3" /translation="MPAYLLLLACNVLLVLGAHVQRELVLTWEEGAPNGQSRQMIKTNG QFPSPTLIFDEGDDVEVGGISFAN*" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" CDS 2559..3032 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_4" /translation="MLFNSEVGVEEHVVLWSFQETTSITMAEEIKLTPLETFAQAISAS AKTIATYCRDSGHPQLSDDNSSGLTGDVLPPSAPQAVTAARQTILEASYRLQQLVTEPS QYLPRLTVYVSVEQSPMKDQTNDRKAPAPGCLTLAVPFQNPGAHPRARHQDIL*" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" CDS 3007..3576 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_5" /translation="MQGTRTYYELATEAKVPLHQLQSIARMAITGSFLREPEPNIVAHS RTSAHFVENPSLRDWTLFLAEDTAPMAMKLVEATEKWGDTRSKTETAFNLALGTDLAFF KYLSSNPQFTQKFSGYMKNVTASEGTSIKHLVNGFDWASLGNAIVVDVRLQSSFTPYRS HTDVIFYRLAVLLVMQALLSRNRSPI*" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" CDS 3600..4043 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_6" /translation="MVTSTSKDNREKTPLPETVASRISFESHDFFKPQPVQNADVYLLR MILHDWSFKEAGEILANLVPSVKQGARILIMDTVLPRHGTVPVTEEALLRVRDMTMMET FNSHEREIDEWKDLIQGVHTGLRVQQVIQPAGSSMAIIEVVRG*" + /function="catalytic activity" + /colour="129 14 21" + /ApEinfo_fwdcolor="#810e15" + /ApEinfo_revcolor="#810e15" misc_feature 3648..3962 /inference="protein motif" /db_xref="PFAM:PF00891" /db_xref="InterPro:IPR001077" + /db_xref="GO:0008171" /note="e-value: 4.890642309934635e-16" /note="p-value: 1.7681280946979883e-19" /function="O-methyltransferase domain" /standard_name="PF00891" CDS 4337..4792 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_7" /translation="MTQIVFGIAPTLLKTFSHLTALDLWRPSAPYVFDPVTSSTYLGTI ADGVEEFLGIFYGQDTGGSNRFAPPKPYIPSRHSFINASTAGAACPQPYVPLPADPYTV LTNVSEDCLSLRIARPENTKSTAKLPVMVWLYGGAYNRLPTDLQWET*" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" misc_feature 4478..4756 /inference="protein motif" /db_xref="PFAM:PF00135" /db_xref="InterPro:IPR002018" /note="e-value: 4.819217021121008e-21" /note="p-value: 1.7423055029360116e-24" - /function="Carboxylesterase family" + /function="Carboxylesterase, type B" /standard_name="PF00135" CDS 5038..5466 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_8" /translation="MQDQRLGIEWIKNHISAFGGDPDNITLFGEDEGATYIALHILSNH EVPFHRAILQSGAAITHHDVNGNRSARNFAAVAARCNCLSDGDRQVDSQDTVDCLRRVP MEDLVNATFEVAHSVDPVNGFRALYVLLHFPSHKCKQD*" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" misc_feature 5041..5379 /inference="protein motif" /db_xref="PFAM:PF00135" /db_xref="InterPro:IPR002018" /note="e-value: 4.0935350990176556e-30" /note="p-value: 1.4799476135277136e-33" - /function="Carboxylesterase family" + /function="Carboxylesterase, type B" /standard_name="PF00135" CDS 5477..6253 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_9" /translation="MPAVDGYMIPDEPSNLLSRGQVPANISILAGWTRDESSMSVPTSI @@ -136,16 +172,20 @@ LTLTCPTIFQAWSLRLSSNCTTPVYLYELRQSPFATALNNSGVGYLGIVHFSDVPYVFN ELERTYYITDPEENKLAQRMSASWTAFASGAFPLCERSERSLGRWEEAYGGDRVCRDRM PEHVRVKGIGDNGDQDDGDEIGKLMARCGFINRLEY*" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" misc_feature 5480..6103 /inference="protein motif" /db_xref="PFAM:PF00135" /db_xref="InterPro:IPR002018" /note="e-value: 1.4624647008379705e-15" /note="p-value: 5.287291037013632e-19" - /function="Carboxylesterase family" + /function="Carboxylesterase, type B" /standard_name="PF00135" CDS 7412..8683 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_10" /translation="MTGARFDESDHKWTVEGINGSHGTIRIRCRWYILALGFASKPYIP @@ -156,39 +196,56 @@ FDTNTGALTSIHIQDTDGILLKDRWSYDGVMTTFGMSTSKFPNMFFFYGPQAPTAFSNG PSCIELQGEFVEELILDMIGKGVTRVDTTSEAEKRWKESTLSLWNQFVFSSTKGFYTGE NIPGKKAEPLNWYVLVLGLGVSKR*" + /function="binding" + /function="catalytic activity" + /colour="129 14 21" + /ApEinfo_fwdcolor="#810e15" + /ApEinfo_revcolor="#810e15" misc_feature 7448..7783 /inference="protein motif" /db_xref="PFAM:PF13434" /db_xref="InterPro:IPR025700" /note="e-value: 5.955898730893757e-08" /note="p-value: 2.153253337271785e-11" - /function="L-lysine 6-monooxygenase (NADPH-requiring)" + /function="L-lysine 6-monooxygenase/L-ornithine + 5-monooxygenase" /standard_name="PF13434" misc_feature 7517..7717 /inference="protein motif" /db_xref="PFAM:PF00743" /db_xref="InterPro:IPR020946" + /db_xref="GO:0004499" + /db_xref="GO:0050660" + /db_xref="GO:0050661" /note="e-value: 5.246542281818287e-07" /note="p-value: 1.8967976434628658e-10" - /function="Flavin-binding monooxygenase-like" + /function="Flavin monooxygenase-like" /standard_name="PF00743" CDS 9454..10038 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_11" /translation="MCRGRLTRTVDERGIVSTESAHAAQRHHLASHVLDARFAGSIARL GSLCLFLALLVAFVQELQKSESHHQRSGGVGLEDRRVVREGLVKPVVTHFGYVPFRRRS CGMGSQVRCGDSSVIHQEVDIPILGGDVVDDALKVSMRGNAALDRVDVAMGLSQIVSTI VIALWTWFVLNQPTAWLLLVRARAVARVCRL*" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" CDS 10763..11191 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_12" /translation="MRAGQLVPLVSTPTPSCLALQIVFCCCSTFLSDPLVLQNHRKMAD EQKTPLESGQQPAVAQHTSTAELQTEKPGQMNGNGTADKPGPPGGKPFGPGMGPPIQYP TGFKLYSIMTGLYLASFLTALVGWRSITDLTDSETYIG*" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" CDS 11204..12316 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_13" /translation="MLVVAIPQITDHFNSIDDIGWYGSAYLLTFCAFQLLFGKIYSFYN @@ -198,31 +255,43 @@ FVGVQLWLQDKGTIPPRVMKQRSIAAGMAFTICVTAGFMSFNYYLPIWFQAIKNASSFH SGVMMLPTVISSGVASLACGFIIHRVGYYTPFMIGGSVLMAIGAGLLTTFTPTTEHPKW IGYQVLWALGCGMSTFQPPFFARCIFVGGY*" + /function="transporter activity" + /colour="100 149 237" + /ApEinfo_fwdcolor="#6495ed" + /ApEinfo_revcolor="#6495ed" misc_feature 11204..12289 /inference="protein motif" /db_xref="PFAM:PF07690" /db_xref="InterPro:IPR011701" + /db_xref="GO:0022857" + /db_xref="GO:0055085" /note="e-value: 6.020530714201243e-37" /note="p-value: 2.1766199255969786e-40" - /function="Major Facilitator Superfamily" + /function="Major facilitator superfamily" /standard_name="PF07690" misc_feature 11252..11935 /inference="protein motif" /db_xref="PFAM:PF06609" /db_xref="InterPro:IPR010573" + /db_xref="GO:0022857" + /db_xref="GO:0055085" /note="e-value: 9.83839354265682e-09" /note="p-value: 3.55690294383833e-12" - /function="Fungal trichothecene efflux pump (TRI12)" + /function="Major facilitator transporter Str1/Tri12-like" /standard_name="PF06609" CDS 12335..12781 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_14" /translation="MQQASLAAQTVLPKPDAPIGISLIFFSQSLGGSVFLAVDDSIYSN RLAAKLGSIPNLPQSALTNTGATNIRNLVAPQYLGRLLGGYNDALMDVFRVAVASSCAC VVAAAFMEWKNVRAAKAAGPGGPGGPGGPGGPGGPEGLRGGNKV*" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" CDS 14574..15566 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_15" /translation="MTFEEMLSRPSPPPFAGPSHNSNRPTNMASTNQDQYYHDKGKHGE @@ -231,16 +300,24 @@ ENGSHPTTDQVLKANSDAMKDAADLLACPCAKDFCFPIILGITACRVLAWYQVVIDMYD PEIPMATMPTAREDIKHCPIAFGAYQLDEEVSQAMTSQFVLRNLRAMTRFVKTYVENFC SDINKNRPGSCSLIYRSLGTFMQTRLGNTIEQLEDRLAAFDGEYTKNIG*" + /function="binding" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" misc_feature 14988..15245 /inference="protein motif" /db_xref="PFAM:PF08493" /db_xref="InterPro:IPR013700" + /db_xref="GO:0003677" + /db_xref="GO:0005634" + /db_xref="GO:0006355" + /db_xref="GO:0045122" /note="e-value: 2.686865976406516e-17" /note="p-value: 9.713904470016327e-21" /function="Aflatoxin regulatory protein" /standard_name="PF08493" CDS 16827..18797 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_16" /translation="MAICGIAVRLPGGISNDAQLWDFLLAKRDARSQVPGSRYNISGYH @@ -255,13 +332,17 @@ GAQWPGMGVELFKSNATFRRSILEMDSVLQSLPDAPAWSIADEISKEHQTSMLYLSSYS QPICTALQVALVNTLFELNIRPYAVIGHSSGELAAAYAAGRLTASQAVTLAYYRGIVAG KVAQAGCMAAVGMGASEIIHF*" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" misc_feature 16830..17570 /inference="protein motif" /db_xref="PFAM:PF00109" /db_xref="InterPro:IPR014030" /note="e-value: 9.30510909096118e-60" /note="p-value: 3.364103069761815e-63" - /function="Beta-ketoacyl synthase, N-terminal domain" + /function="Beta-ketoacyl synthase, N-terminal" /standard_name="PF00109" misc_feature 17595..17930 /inference="protein motif" @@ -269,7 +350,7 @@ /db_xref="InterPro:IPR014031" /note="e-value: 2.2857331200304854e-35" /note="p-value: 8.263677223537547e-39" - /function="Beta-ketoacyl synthase, C-terminal domain" + /function="Beta-ketoacyl synthase, C-terminal" /standard_name="PF02801" misc_feature 17937..18290 /inference="protein motif" @@ -277,7 +358,7 @@ /db_xref="InterPro:IPR032821" /note="e-value: 4.800730099641783e-25" /note="p-value: 1.7356218726109122e-28" - /function="Ketoacyl-synthetase C-terminal extension" + /function="Polyketide synthase, C-terminal extension" /standard_name="PF16197" misc_feature 18360..18770 /inference="protein motif" @@ -285,10 +366,10 @@ /db_xref="InterPro:IPR014043" /note="e-value: 1.113401436161595e-26" /note="p-value: 4.025312495161225e-30" - /function="Acyl transferase domain" + /function="Acyl transferase" /standard_name="PF00698" CDS 18806..22078 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_17" /translation="MVVACENSPSSVTISGDIDQVQYVMQEISLAHPEILCRQIKSDTA @@ -310,13 +391,17 @@ WVTRSIQIDCRDPRYSPTLGVARTVRSEFGLDFGTCEVDTLKYTSIGLVIDVFEAFHGR RHGQNAYPEYEYAIREDTVHIGRLSSFSVQEELRRIQKAHVETKDNRISLVAGTSGFDS LAWQADAGQQVQLLGDDEVELQVDTAGVNFLVRCSFQFQGES*" + /function="catalytic activity" + /colour="129 14 21" + /ApEinfo_fwdcolor="#810e15" + /ApEinfo_revcolor="#810e15" misc_feature 18809..19258 /inference="protein motif" /db_xref="PFAM:PF00698" /db_xref="InterPro:IPR014043" /note="e-value: 2.7208690154402465e-16" /note="p-value: 9.836836642950999e-20" - /function="Acyl transferase domain" + /function="Acyl transferase" /standard_name="PF00698" misc_feature 19487..20317 /inference="protein motif" @@ -324,14 +409,13 @@ /db_xref="InterPro:IPR020807" /note="e-value: 2.598574865139864e-60" /note="p-value: 9.394703055458656e-64" - /function="Polyketide synthase dehydratase" + /function="Polyketide synthase, dehydratase domain" /standard_name="PF14765" misc_feature 20786..21256 /inference="protein motif" /db_xref="PFAM:PF13489" /note="e-value: 1.04446701072283e-12" /note="p-value: 3.776091868123029e-16" - /function="Methyltransferase domain" /standard_name="PF13489" misc_feature 20801..21133 /inference="protein motif" @@ -347,7 +431,7 @@ /db_xref="InterPro:IPR041698" /note="e-value: 2.4253465299984994e-13" /note="p-value: 8.76842563267715e-17" - /function="Methyltransferase domain" + /function="Methyltransferase domain 25" /standard_name="PF13649" misc_feature 20807..21103 /inference="protein motif" @@ -355,33 +439,38 @@ /db_xref="InterPro:IPR013217" /note="e-value: 3.7410690716593694e-22" /note="p-value: 1.3525195486837923e-25" - /function="Methyltransferase domain" + /function="Methyltransferase type 12" /standard_name="PF08242" misc_feature 20807..21106 /inference="protein motif" /db_xref="PFAM:PF08241" /db_xref="InterPro:IPR013216" + /db_xref="GO:0008168" /note="e-value: 5.4075572021556884e-12" /note="p-value: 1.9550098344742185e-15" - /function="Methyltransferase domain" + /function="Methyltransferase type 11" /standard_name="PF08241" CDS 22416..22889 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_18" /translation="MQTVLINSASDGVGLAAIQISKMIGATIYATVIGEDKVEYLTASH GIPRDHIFNSRDSSFLDGIMRVTNGRGVDLVLTSLSADFIQASCDCVANFGKLVNLSKP TAANQGQFPIDSFHPNMSYASVDIIDYIKRRPKESKRYVITFRHSYQLCPACN*" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" misc_feature 22449..22766 /inference="protein motif" /db_xref="PFAM:PF00107" /db_xref="InterPro:IPR013149" /note="e-value: 1.1299405916297285e-15" /note="p-value: 4.085106983476965e-19" - /function="Zinc-binding dehydrogenase" + /function="Alcohol dehydrogenase-like, C-terminal" /standard_name="PF00107" CDS 22922..24277 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_19" /translation="MELYKQGHIQPITPVKTFTATDIRQCFDYMQSGQHIGQLRLSLKS @@ -392,13 +481,17 @@ QTLDYSRYENPAQFITGLRDTTGMLDSTGGKSMLLDSRLAAYVGNSAAVTAPTETKTSA NKLNNFVSSAATDSAILSEPSATQFVSLEIARWVFDLLMKPVDDDSEIDLSRSLVDVGL DSLAAVEMRSWLKSSLGLDISVLEIMASPSLAAMGEHVIRELVRKFGGDNKN*" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" misc_feature 23114..23638 /inference="protein motif" /db_xref="PFAM:PF08659" /db_xref="InterPro:IPR013968" /note="e-value: 1.5610077818520667e-61" /note="p-value: 5.643556695054471e-65" - /function="KR domain" + /function="Polyketide synthase, ketoreductase domain" /standard_name="PF08659" misc_feature 23123..23584 /inference="protein motif" @@ -406,7 +499,7 @@ /db_xref="InterPro:IPR002347" /note="e-value: 1.1731018314976082e-07" /note="p-value: 4.2411490654288077e-11" - /function="short chain dehydrogenase" + /function="Short-chain dehydrogenase/reductase SDR" /standard_name="PF00106" misc_feature 24071..24232 /inference="protein motif" @@ -414,25 +507,28 @@ /db_xref="InterPro:IPR009081" /note="e-value: 3.463550267794435e-10" /note="p-value: 1.2521873708584363e-13" - /function="Phosphopantetheine attachment site" + /function="Phosphopantetheine binding ACP domain" /standard_name="PF00550" CDS 25423..25710 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_20" /translation="MAQKLRFYLFGDQTYDYDEQLRALLTSHDPVVRSFLERAYYTLRA EVARIPNGYQARISRFSSIAELLSQRREHGVDASLEQALTVVYQLASFMR*" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" misc_feature 25444..25704 /inference="protein motif" /db_xref="PFAM:PF16073" /db_xref="InterPro:IPR032088" /note="e-value: 9.422238725791962e-24" /note="p-value: 3.406449286258844e-27" - /function="Starter unit:ACP transacylase in aflatoxin - biosynthesis" + /function="Starter unit:ACP transacylase" /standard_name="PF16073" CDS 26198..29653 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_21" /translation="MSRPYISAYASGGVTISGPPSVLAELRNTPGLSKLRAKDIPIHAP @@ -455,14 +551,17 @@ GMVKSTLGNSIKALPTLQRNRNTWEVLTESVSTLYCMGFDINWTEYHRDFPSSQRVLRL PSYSWDLKSYWIPYRNDWTLYKGDIVPESSIALPTHQNKPHSTSPKQQAPTPILETTTL HRIVDEKSTEGTFSITCESDVSRPDLSPLVQGHKVEGIGLCTPV*" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" misc_feature 26201..26338 /inference="protein motif" /db_xref="PFAM:PF16073" /db_xref="InterPro:IPR032088" /note="e-value: 4.380197593141013e-11" /note="p-value: 1.5835855362042708e-14" - /function="Starter unit:ACP transacylase in aflatoxin - biosynthesis" + /function="Starter unit:ACP transacylase" /standard_name="PF16073" misc_feature 26729..27475 /inference="protein motif" @@ -470,7 +569,7 @@ /db_xref="InterPro:IPR014030" /note="e-value: 2.7499815692371726e-82" /note="p-value: 9.942088102809735e-86" - /function="Beta-ketoacyl synthase, N-terminal domain" + /function="Beta-ketoacyl synthase, N-terminal" /standard_name="PF00109" misc_feature 27497..27862 /inference="protein motif" @@ -478,7 +577,7 @@ /db_xref="InterPro:IPR014031" /note="e-value: 2.4774456171918303e-34" /note="p-value: 8.956780973217029e-38" - /function="Beta-ketoacyl synthase, C-terminal domain" + /function="Beta-ketoacyl synthase, C-terminal" /standard_name="PF02801" misc_feature 27896..28216 /inference="protein motif" @@ -486,7 +585,7 @@ /db_xref="InterPro:IPR032821" /note="e-value: 8.475099126640419e-07" /note="p-value: 3.0640271607521397e-10" - /function="Ketoacyl-synthetase C-terminal extension" + /function="Polyketide synthase, C-terminal extension" /standard_name="PF16197" misc_feature 28322..29233 /inference="protein motif" @@ -494,10 +593,10 @@ /db_xref="InterPro:IPR014043" /note="e-value: 4.739349423268586e-38" /note="p-value: 1.7134307387088164e-41" - /function="Acyl transferase domain" + /function="Acyl transferase" /standard_name="PF00698" CDS 29804..30544 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_22" /translation="MVIEKALMPLNAGPQLLRVTASLIWSEKEASVRFYSVDVRRPSSK @@ -505,16 +604,20 @@ YRFNGPMAYNMVQALAEFHPDYRCIDETILDNETLEAACTVSFGNVKKEGVFHTHPGYI DGLTQSGGFVMNANDKTNLGVEVFVNHGWDSFQLYEPVTDDRSYQTHVRMRPAESNQWK GDVVVLSGENLVACVRGLTVSRET*" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" misc_feature 29918..30535 /inference="protein motif" /db_xref="PFAM:PF14765" /db_xref="InterPro:IPR020807" /note="e-value: 8.019334685871699e-11" /note="p-value: 2.8992533209948296e-14" - /function="Polyketide synthase dehydratase" + /function="Polyketide synthase, dehydratase domain" /standard_name="PF14765" CDS 30591..32633 - /inference="ab initio prediction:Prodigal:2.6" + /inference="ab initio prediction:Pyrodigal:2.0.4" /transl_table=11 /locus_tag="BGC0001866.1_23" /translation="MLTTFQIQGVPRRVLRYILQSSAKTTQTATSSVPAPSQAPVMVPQ @@ -529,13 +632,17 @@ LAYRAAQILQKAAANPQKPVVESLLLLDSPPPTGLGKLPKHFFDYCDQIGIFGQGTAKA PEWLITHFQGTNSVLHEYHATPFSFGTAPRTGIIWASQTVFETRAVAPPPVRPDDTEDM KFLTERRTDFSAGSWGHMFPGTEVLIETAYGADHFSLLVSLLFRD*" + /function="unknown" + /colour="128 128 128" + /ApEinfo_fwdcolor="#808080" + /ApEinfo_revcolor="#808080" misc_feature 30789..30974 /inference="protein motif" /db_xref="PFAM:PF00550" /db_xref="InterPro:IPR009081" /note="e-value: 6.066413293337807e-14" /note="p-value: 2.193207987468477e-17" - /function="Phosphopantetheine attachment site" + /function="Phosphopantetheine binding ACP domain" /standard_name="PF00550" misc_feature 31110..31304 /inference="protein motif" @@ -543,7 +650,7 @@ /db_xref="InterPro:IPR009081" /note="e-value: 4.042537132792419e-10" /note="p-value: 1.461510170930014e-13" - /function="Phosphopantetheine attachment site" + /function="Phosphopantetheine binding ACP domain" /standard_name="PF00550" misc_feature 31485..31670 /inference="protein motif" @@ -551,15 +658,16 @@ /db_xref="InterPro:IPR009081" /note="e-value: 1.4101442109719659e-08" /note="p-value: 5.098135252971677e-12" - /function="Phosphopantetheine attachment site" + /function="Phosphopantetheine binding ACP domain" /standard_name="PF00550" misc_feature 31917..32240 /inference="protein motif" /db_xref="PFAM:PF00975" /db_xref="InterPro:IPR001031" + /db_xref="GO:0009058" /note="e-value: 6.91897478936856e-24" /note="p-value: 2.5014370171252933e-27" - /function="Thioesterase domain" + /function="Thioesterase" /standard_name="PF00975" ORIGIN 1 ttacatccgc ttagtctcct cggacttcca tgcttccttg tccattgaga aacgatccct