Mercurial > repos > amadeo > amadeo
comparison tool_conf.xml.sample @ 5:fe377efdd4cc draft default tip
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| author | amadeo |
|---|---|
| date | Mon, 05 Sep 2016 06:02:27 -0400 |
| parents | ed814636753a |
| children |
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| 4:838743a8fa68 | 5:fe377efdd4cc |
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| 1 <?xml version="1.0" encoding="utf-8"?> | |
| 2 <toolbox monitor="true">d | |
| 3 <section id="CREF" name="CREF"> | |
| 4 <tool file="CREF/short-headers.xml"/> | |
| 5 <tool file="CREF/extract_motifs_codes.xml"/> | |
| 6 <tool file="CREF/list_motifs.xml"/> | |
| 7 <tool file="CREF/extract_motifs_subset.xml"/> | |
| 8 </section> | |
| 9 <section id="First_version" name="Remove same overlapped motifs v.1.0"> | |
| 10 <tool file="First_version/sorting_first.xml"/> | |
| 11 <tool file="First_version/remove_motifs_overlaped.xml"/> | |
| 12 </section> | |
| 13 <section id="Second" name="Remove same and differents overlapped motifs v.2.0"> | |
| 14 <tool file="Second/remove_motifs_v2.xml"/> | |
| 15 <tool file="Second/step1.xml"/> | |
| 16 <tool file="Second/step2.xml"/> | |
| 17 </section> | |
| 18 <section id="Matrix" name="Gene-motif matrix"> | |
| 19 <tool file="Matrix/matrix_generator.xml"/> | |
| 20 </section> | |
| 21 <section id="Motif_search" name="CREF results analysis"> | |
| 22 <tool file="Motif_search/motif_search_galaxy.xml"/> | |
| 23 <tool file="Motif_search/sort_genes_galaxy.xml"/> | |
| 24 <tool file="Motif_search/sort_positions_galaxy.xml"/> | |
| 25 <tool file="Motif_search/rules.xml"/> | |
| 26 <tool file="Motif_search/testrules_galaxy.xml"/> | |
| 27 </section> | |
| 28 </toolbox> |