Mercurial > repos > amadeo > amadeo
diff Tools/Second/remove_motifs_v2.xml @ 0:229d36377838 draft
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author | amadeo |
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date | Mon, 05 Sep 2016 05:53:08 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Tools/Second/remove_motifs_v2.xml Mon Sep 05 05:53:08 2016 -0400 @@ -0,0 +1,12 @@ +<tool id="remove_same_dif_motifs" name="Remove motifs overlaped" version="1.0.0"> + <description>Script to compare contigous motifs in gff file and, in case that two overlap, remove the motif with the highest p value</description> + <command interpreter="perl">remove_motifs_galaxy.pl $input $output $secondoutput $value </command> + <inputs> + <param format="gff" name="input" type="data" label="FIMO file"/> + <param name="value" size="3" type="integer" value="20" label="Overlap value"/> + </inputs> + <outputs> + <data format="gff" name="output" label="positive_strand" /> + <data format="gff" name="secondoutput" label="negative_strand" /> + </outputs> +</tool>