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author amadeo
date Mon, 05 Sep 2016 05:53:08 -0400
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<tool id="matrix_generator" name="Gene-motif matrix" version="1.0.0">
	<description>Script to create csv formatted gene vs TF matrix from a filtered gff file. GFF file can contain just Positive or Just neagtive strand TFBS. Has two types of matrix produced: (0) resence/Abscence with only 1 and 0s. With option=0. (1) counts of TFs with numbers 1,3,5 etc. </description>
	<command interpreter="perl">gene-TF-matrix-csv-galaxy.pl $input $output $value </command>
	<inputs>
		<param format="gff" name="input" type="data" label="FIMO file"/>
		<param name="value" size="1" type="integer" value="0" label="Type of matrix"/>
	</inputs>
	<outputs>
		<data format="csv" name="output" label="Gene-Motif-matrix" />
	</outputs>
</tool>