# HG changeset patch
# User amadeo
# Date 1473069263 14400
# Node ID ed814636753abee17704b571db83926548be1651
# Parent  229d36377838c54b9173f8eb89761ae5f231f64a
Uploaded

diff -r 229d36377838 -r ed814636753a tool_conf.xml.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_conf.xml.sample	Mon Sep 05 05:54:23 2016 -0400
@@ -0,0 +1,28 @@
+<?xml version="1.0" encoding="utf-8"?>
+<toolbox monitor="true">d
+  <section id="CREF" name="CREF">
+    <tool file="CREF/short-headers.xml"/>
+    <tool file="CREF/extract_motifs_codes.xml"/>
+    <tool file="CREF/list_motifs.xml"/>
+    <tool file="CREF/extract_motifs_subset.xml"/>
+  </section>
+  <section id="First_version" name="Remove same overlapped motifs v.1.0">
+    <tool file="First_version/sorting_first.xml"/>
+    <tool file="First_version/remove_motifs_overlaped.xml"/>
+  </section>
+   <section id="Second" name="Remove same and differents overlapped motifs v.2.0">
+    <tool file="Second/remove_motifs_v2.xml"/>
+    <tool file="Second/step1.xml"/>
+    <tool file="Second/step2.xml"/>
+  </section>
+  <section id="Matrix" name="Gene-motif matrix">
+    <tool file="Matrix/matrix_generator.xml"/>
+  </section>
+  <section id="Motif_search" name="CREF results analysis">
+    <tool file="Motif_search/motif_search_galaxy.xml"/>
+    <tool file="Motif_search/sort_genes_galaxy.xml"/>
+    <tool file="Motif_search/sort_positions_galaxy.xml"/>
+    <tool file="Motif_search/rules.xml"/>
+    <tool file="Motif_search/testrules_galaxy.xml"/>
+  </section>
+</toolbox>
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