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1 <tool id="cmpfastq" name="Compare two fast files">
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2 <description>Comparing two fastq files</description>
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3 <requirements>
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4 <requirement type="package" version="1.0.0">cmpfastq</requirement>
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5 </requirements>
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6 <command interpreter="perl">cmpfastq.plx $input1 $input2 $output1 $output2 $output3 $output4</command>
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7 <inputs>
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8 <param name="input1" type="data" format="fastq" label="Source file 1"/>
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9 <param name="input2" type="data" format="fastq" label="Source file 2"/>
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10 <!--<param name="input3" type="select" label="Option">
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11 <option value="d">d</option>
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12 <option value="h ">h</option>
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13 </param> -->
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14 </inputs>
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15 <outputs>
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16 <data format="txt" name="output1" file="out3.out" label="Common file 1"/>
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17 <data format="txt" name="output2" file="out4.out" label="Common file 2"/>
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18 <data format="txt" name="output3" file="out5.out" label="Unique file 1"/>
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19 <data format="txt" name="output4" file="out6.out" label="Unique file 2"/>
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20 </outputs>
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21
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22 <tests>
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23 <test>
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24 <!-- <param name="input" value="fa_gc_content_input.fa"/>
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25 <output name="out_file1" file="fa_gc_content_output.txt"/> -->
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26 </test>
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27 </tests>
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28
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29 <help>
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30 This tool computes GC content from a FASTA file.
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31 </help>
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32
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33 </tool>
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