Mercurial > repos > amol > cmpfastq

view tool_dependencies.xml @ 12:b8a437680259 draft

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author amol
date Thu, 27 Jun 2013 15:50:07 -0400
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<?xml version="1.0"?>
<tool_dependency>
    <package name="cmpfastq" version="1.0.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url" target_filename="cmpfastq.plx">
http://compbio.brc.iop.kcl.ac.uk/software/download/cmpfastq                </action>
                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>cmpfastq/bin</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
           View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
        </readme>
    </package>
</tool_dependency>