# HG changeset patch
# User amol
# Date 1372361563 14400
# Node ID 7604eca319775b5fbf6f749a56c468d631d9ee7c
# Parent  679c91537c4706eca83e4a391b02d8b9cb6be2c3
Deleted selected files

diff -r 679c91537c47 -r 7604eca31977 cmpfastq.xml
--- a/cmpfastq.xml	Thu Jun 27 12:44:44 2013 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,33 +0,0 @@
-<tool id="cmpfastq" name="Compare two fast files">
-  <description>Comparing two fastq files</description>
-  <requirements>
-	<requirement type="package" version="1">cmpfastq</requirement>
-  </requirements>
-  <command interpreter="perl">cmpfastq.plx $input1 $input2 $output1 $output2 $output3 $output4</command>
-  <inputs>
-    <param name="input1" type="data"  format="fastq" label="Source file 1"/>
-    <param name="input2" type="data" format="fastq" label="Source file 2"/>
-    <!--<param name="input3" type="select" label="Option">
-        <option value="d">d</option>
-        <option value="h ">h</option>
-     </param> -->
-  </inputs>
-  <outputs>
-    <data format="txt" name="output1" file="out3.out" label="Common file 1"/>
-    <data format="txt" name="output2" file="out4.out" label="Common file 2"/>
-    <data format="txt" name="output3" file="out5.out" label="Unique file 1"/>
-    <data format="txt" name="output4" file="out6.out" label="Unique file 2"/>
-  </outputs>
-
-  <tests>
-    <test>
-     <!-- <param name="input" value="fa_gc_content_input.fa"/>
-      <output name="out_file1" file="fa_gc_content_output.txt"/> -->
-    </test> 
-  </tests>
-
-  <help>
-This tool computes GC content from a FASTA file.
-  </help>
-
-</tool>
diff -r 679c91537c47 -r 7604eca31977 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Jun 27 12:44:44 2013 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,17 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-	<package name="cmpfastq" version="1">
-		<install version="1.0">
-			<actions>
-				<action type="shell_command">curl -o "cmpfastq.plx" http://compbio.brc.iop.kcl.ac.uk/software/download/cmpfastq</action>
-				<action type="move_directory_files">
-					<source_directory>bin</source_directory>
-					<destination_directory>$INSTALL_DIR/bin</destination_directory>
-				</action>
-				<action type="set_environment">
-					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-				</action>
-			</actions>
-		</install>
-	</package>
-</tool_dependency>
\ No newline at end of file