Mercurial > repos > amol > cmpfastq
changeset 8:f1f639636fc3 draft
Uploaded
author | amol |
---|---|
date | Thu, 27 Jun 2013 12:44:36 -0400 |
parents | 6891cba2b623 |
children | 679c91537c47 |
files | cmpfastq.xml |
diffstat | 1 files changed, 33 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cmpfastq.xml Thu Jun 27 12:44:36 2013 -0400 @@ -0,0 +1,33 @@ +<tool id="cmpfastq" name="Compare two fast files"> + <description>Comparing two fastq files</description> + <requirements> + <requirement type="package" version="1">cmpfastq</requirement> + </requirements> + <command interpreter="perl">cmpfastq.plx $input1 $input2 $output1 $output2 $output3 $output4</command> + <inputs> + <param name="input1" type="data" format="fastq" label="Source file 1"/> + <param name="input2" type="data" format="fastq" label="Source file 2"/> + <!--<param name="input3" type="select" label="Option"> + <option value="d">d</option> + <option value="h ">h</option> + </param> --> + </inputs> + <outputs> + <data format="txt" name="output1" file="out3.out" label="Common file 1"/> + <data format="txt" name="output2" file="out4.out" label="Common file 2"/> + <data format="txt" name="output3" file="out5.out" label="Unique file 1"/> + <data format="txt" name="output4" file="out6.out" label="Unique file 2"/> + </outputs> + + <tests> + <test> + <!-- <param name="input" value="fa_gc_content_input.fa"/> + <output name="out_file1" file="fa_gc_content_output.txt"/> --> + </test> + </tests> + + <help> +This tool computes GC content from a FASTA file. + </help> + +</tool>