Mercurial > repos > andreu > qcma

comparison HumMeth27QCReport/README.txt @ 0:55561a945415 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Migrated tool version 1.0 from old tool shed archive to new tool shed repository
author andreu
date Tue, 07 Jun 2011 17:26:58 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:55561a945415
1 HumMeth27QCReport is a tool for quality control and preprocessing of Illumina's Infinium BeadChip methylation assays. The automated analysis pipeline comprises data import, normalization, quality diagnostics and data export.
2
3 This requires:
4
5 * Perl
6 * Python 2
7 * R (≥ 2.13.0)
8 * The following R packages: methylumi, lumi, IlluminaHumanMethylation27k.db, IlluminaHumanMethylation450k.db, amap, Hmisc, gplots, plotrix, WriteXLS, tcltk2, AnnotationDbi (≥ 0.0.89), Biobase (≥ 1.15.29)