Mercurial > repos > andreu > qcma
diff HumMeth27QCReport/README.txt @ 0:55561a945415 default tip
Migrated tool version 1.0 from old tool shed archive to new tool shed repository
author | andreu |
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date | Tue, 07 Jun 2011 17:26:58 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/HumMeth27QCReport/README.txt Tue Jun 07 17:26:58 2011 -0400 @@ -0,0 +1,8 @@ +HumMeth27QCReport is a tool for quality control and preprocessing of Illumina's Infinium BeadChip methylation assays. The automated analysis pipeline comprises data import, normalization, quality diagnostics and data export. + +This requires: + +* Perl +* Python 2 +* R (≥ 2.13.0) +* The following R packages: methylumi, lumi, IlluminaHumanMethylation27k.db, IlluminaHumanMethylation450k.db, amap, Hmisc, gplots, plotrix, WriteXLS, tcltk2, AnnotationDbi (≥ 0.0.89), Biobase (≥ 1.15.29)