Mercurial > repos > anmoljh > align_and_estimate_abundance
comparison align_and_estimate_abundance.xml @ 2:96a9a03f8948 draft
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| author | anmoljh |
|---|---|
| date | Thu, 27 Aug 2015 12:41:35 -0400 |
| parents | 16aaa05e7d67 |
| children | 5587e12bd075 |
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| 1:16aaa05e7d67 | 2:96a9a03f8948 |
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| 3 <description> using utility align_and_estimate_abundance.pl</description> | 3 <description> using utility align_and_estimate_abundance.pl</description> |
| 4 | 4 |
| 5 <requirements> | 5 <requirements> |
| 6 <requirement type="package" version="r20140717">trinityrnaseq</requirement> | 6 <requirement type="package" version="r20140717">trinityrnaseq</requirement> |
| 7 <requirement type="package" version="0.12.7">bowtie</requirement> | 7 <requirement type="package" version="0.12.7">bowtie</requirement> |
| 8 <requirement type="package" version="2.1">samtools</requirement> | 8 <requirement type="package" version="1.2">samtools</requirement> |
| 9 <requirement type="package" version="1.5.1">eXpress</requirement> | 9 <requirement type="package" version="1.5.1">eXpress</requirement> |
| 10 </requirements> | 10 </requirements> |
| 11 | 11 |
| 12 <command> \$TRINITY_HOME/util/align_and_estimate_abundance.pl | 12 <command> \$TRINITY_HOME/util/align_and_estimate_abundance.pl |
| 13 --transcripts $transcripts | 13 --transcripts $transcripts |