Mercurial > repos > anmoljh > package_trinityrnaseq_r20140717

comparison tool_dependencies.xml @ 2:5a4325a558ee

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included set_environment_for_install for complile time env
author 'Anmol J. Hemrom' <anmol.jh@gmail.com>
date Thu, 03 Sep 2015 10:39:38 +0100
parents c48dd15d60a4
children e071f6a8146c
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1:c48dd15d60a4 2:5a4325a558ee
8 </package> 8 </package>
9 <package name="trinityrnaseq" version="r20140717"> 9 <package name="trinityrnaseq" version="r20140717">
10 <install version="1.0"> 10 <install version="1.0">
11 <actions> 11 <actions>
12 <action type="download_by_url">http://sourceforge.net/projects/trinityrnaseq/files/trinityrnaseq_r20140717.tar.gz</action> 12 <action type="download_by_url">http://sourceforge.net/projects/trinityrnaseq/files/trinityrnaseq_r20140717.tar.gz</action>
13 <action type="set_environment_for_install">
14 <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
15 <package name="ncurses" version="5.9" />
16 </repository>
17 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
18 <package name="zlib" version="1.2.8" />
19 </repository>
20 </action>
13 <action type="shell_command">make</action> 21 <action type="shell_command">make</action>
14 <action type="move_directory_files"> 22 <action type="move_directory_files">
15 <source_directory>.</source_directory> 23 <source_directory>.</source_directory>
16 <destination_directory>$INSTALL_DIR</destination_directory> 24 <destination_directory>$INSTALL_DIR</destination_directory>
17 </action> 25 </action>