Mercurial > repos > anmoljh > package_trinityrnaseq_r20140717

comparison tool_dependencies.xml @ 6:ae82c6c09b69

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few changes
author 'Anmol J. Hemrom' <anmol.jh@gmail.com>
date Thu, 03 Sep 2015 14:15:52 +0100
parents 03100f652146
children 484a0e253167
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5:03100f652146 6:ae82c6c09b69
16 </repository> 16 </repository>
17 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> 17 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
18 <package name="zlib" version="1.2.8" /> 18 <package name="zlib" version="1.2.8" />
19 </repository> 19 </repository>
20 </action> 20 </action>
21 <action type="shell_command">sed -i.bak -e 's/-lcurses/-lncurses/' trinity-plugins/rsem/sam/Makefile</action>
21 <action type="shell_command">make</action> 22 <action type="shell_command">make</action>
22 <action type="move_directory_files"> 23 <action type="move_directory_files">
23 <source_directory>.</source_directory> 24 <source_directory>.</source_directory>
24 <destination_directory>$INSTALL_DIR</destination_directory> 25 <destination_directory>$INSTALL_DIR</destination_directory>
25 </action> 26 </action>