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annotate tool_dependencies.xml @ 4:2ded079df884 draft

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Uploaded tool yep file with BioSeqIO (Bioperl) and Getopt long
author antmarge
date Sat, 18 Mar 2017 18:46:22 -0400
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2ded079df884 Uploaded tool yep file with BioSeqIO (Bioperl) and Getopt long
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3
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4 <set_environment version="1.0">
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5 <environment_variable action="set_to" name="LINKYX_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
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6 </set_environment>
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7
2ded079df884 Uploaded tool yep file with BioSeqIO (Bioperl) and Getopt long
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8 <package name="perl" version="5.18.1">
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9 <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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10 </package>
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12 <package name="samtools-fpic" version="0.1.19">
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13 <repository changeset_revision="a6c82a5d0b51" name="package_samtools_0_1_19_custom" owner="biomonika" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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14 </package>
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15
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16 <package name="bioperl" version="1.6.922">
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17 <install version="1.0">
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18 <actions>
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19 <action type="set_environment_for_install">
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20 <repository changeset_revision="a6c82a5d0b51" name="package_samtools_0_1_19_custom" owner="biomonika" toolshed="https://toolshed.g2.bx.psu.edu">
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21 <package name="samtools-fpic" version="0.1.19" />
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22 </repository>
2ded079df884 Uploaded tool yep file with BioSeqIO (Bioperl) and Getopt long
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23 <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
2ded079df884 Uploaded tool yep file with BioSeqIO (Bioperl) and Getopt long
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24 <package name="perl" version="5.18.1" />
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25 </repository>
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26 </action>
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27 <action type="setup_perl_environment">
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28
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29 <!-- allow downloading and installing an Perl package from cpan.org-->
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30 <package>Getopt::Long</package>
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31 <package>http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.007001.tar.gz</package>
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32 </action>
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33 </actions>
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34 </install>
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35 <readme>
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36 Bundle::BioPerl
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37 </readme>
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38 </package>
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39 </tool_dependency>