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comparison tool_dependencies.xml @ 6:f4b2c15caf52 draft

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author antmarge
date Sat, 18 Mar 2017 19:07:12 -0400
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5:1b49a4549f26 6:f4b2c15caf52
1 <?xml version="1.0"?>
2 <tool_dependency>
3
4 <set_environment version="1.0">
5 <environment_variable action="set_to" name="LINKYX_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
6 </set_environment>
7
8 <package name="perl" version="5.18.1">
9 <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
10 </package>
11
12 <package name="bioperl" version="1.6.922">
13 <install version="1.0">
14 <actions>
15 <action type="set_environment_for_install">
16 <repository changeset_revision="a6c82a5d0b51" name="package_samtools_0_1_19_custom" owner="biomonika" toolshed="https://toolshed.g2.bx.psu.edu">
17 <package name="samtools-fpic" version="0.1.19" />
18 </repository>
19 <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
20 <package name="perl" version="5.18.1" />
21 </repository>
22 </action>
23 <action type="setup_perl_environment">
24
25 <!-- allow downloading and installing an Perl package from cpan.org-->
26 <package>Getopt::Long</package>
27 <package>http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.007001.tar.gz</package>
28 </action>
29 </actions>
30 </install>
31 <readme>
32 Bundle::BioPerl
33 </readme>
34 </package>
35 </tool_dependency>