# HG changeset patch
# User antmarge
# Date 1489878410 14400
# Node ID 1b49a4549f26ed415aeac4d2626528b3bf678b54
# Parent 2ded079df884eecdb67a0c8bfef25e54982a0929
Deleted selected files
diff -r 2ded079df884 -r 1b49a4549f26 singleFitness.xml
--- a/singleFitness.xml Sat Mar 18 18:46:22 2017 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,47 +0,0 @@
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- assess single insertion mutation effect on organismal fitness
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- singleFitness.pl
- -c $cutoff
- -o $outfile
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- $input
- #for $a in $additionalcsv
- ${a.input2}
- #end for
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- **Tool Description**
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- This tool takes calculates a single insertion mutation's fitness effect on an organism based on fitness calculation data from multiple libraries.
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- **Options**
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- *The csv fitness file(s)*: These are the csv (comma separated values) files containing the fitness values that will be used in downstream analyses. Since they should have been produced by the "Calculate Fitness" tool, each line besides the header should represent the following information for an insertion location: position,strand,count_1,count_2,ratio,mt_freq_t1,mt_freq_t2,pop_freq_t1,pop_freq_t2,gene,D,W,nW
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- *Cutoff*: This value lets you ignore the fitness scores of any insertion locations with an average count (the number of counts from t1 and t2 divided by 2) less than it.
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diff -r 2ded079df884 -r 1b49a4549f26 tool_dependencies.xml
--- a/tool_dependencies.xml Sat Mar 18 18:46:22 2017 -0400
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- $REPOSITORY_INSTALL_DIR
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- Getopt::Long
- http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.007001.tar.gz
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- Bundle::BioPerl
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