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comparison test-data/vcf2tsv-test1.tab @ 4:fd6e01595a72 draft default tip

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author anton
date Mon, 15 Sep 2014 14:47:06 -0400
parents 8e1a693e7a52
children
comparison
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3:4a464f44b556 4:fd6e01595a72
1 CHROM POS ID REF ALT QUAL FILTER AA AC AF AN DP NS DB H2 SAMPLE DP GQ GT HQ
2 19 111 . A C 9.6 . . . . . . . 0 0 NA00001 . . 0|0 10,10
3 19 111 . A C 9.6 . . . . . . . 0 0 NA00002 . . 0|0 10,10
4 19 111 . A C 9.6 . . . . . . . 0 0 NA00003 . . 0/1 3,3
5 19 112 . A G 10 . . . . . . . 0 0 NA00001 . . 0|0 10,10
6 19 112 . A G 10 . . . . . . . 0 0 NA00002 . . 0|0 10,10
7 19 112 . A G 10 . . . . . . . 0 0 NA00003 . . 0/1 3,3
8 20 14370 rs6054257 G A 29 PASS . . 0.5 . 14 3 1 1 NA00001 1 48 0|0 51,51
9 20 14370 rs6054257 G A 29 PASS . . 0.5 . 14 3 1 1 NA00002 8 48 1|0 51,51
10 20 14370 rs6054257 G A 29 PASS . . 0.5 . 14 3 1 1 NA00003 5 43 1/1 .,.
11 20 17330 . T A 3 q10 . . 0.017 . 11 3 0 0 NA00001 3 49 0|0 58,50
12 20 17330 . T A 3 q10 . . 0.017 . 11 3 0 0 NA00002 5 3 0|1 65,3
13 20 17330 . T A 3 q10 . . 0.017 . 11 3 0 0 NA00003 3 41 0/0 .,.
14 20 1110696 rs6040355 A G,T 67 PASS T . 0.333,0.667 . 10 2 1 0 NA00001 6 21 1|2 23,27
15 20 1110696 rs6040355 A G,T 67 PASS T . 0.333,0.667 . 10 2 1 0 NA00002 0 2 2|1 18,2
16 20 1110696 rs6040355 A G,T 67 PASS T . 0.333,0.667 . 10 2 1 0 NA00003 4 35 2/2 .,.
17 20 1230237 . T . 47 PASS T . . . 13 3 0 0 NA00001 . 54 0|0 56,60
18 20 1230237 . T . 47 PASS T . . . 13 3 0 0 NA00002 4 48 0|0 51,51
19 20 1230237 . T . 47 PASS T . . . 13 3 0 0 NA00003 2 61 0/0 .,.
20 20 1234567 microsat1 G GA,GAC 50 PASS G 3,1 . 6 9 3 0 0 NA00001 4 . 0/1 .
21 20 1234567 microsat1 G GA,GAC 50 PASS G 3,1 . 6 9 3 0 0 NA00002 2 17 0/2 .
22 20 1234567 microsat1 G GA,GAC 50 PASS G 3,1 . 6 9 3 0 0 NA00003 3 40 1/1 .
23 20 1235237 . T . 0 . . . . . . . 0 0 NA00001 . . 0/0 .
24 20 1235237 . T . 0 . . . . . . . 0 0 NA00002 . . 0|0 .
25 X 10 rsTest AC A,ATG 10 PASS . . . . . . 0 0 NA00001 . . 0 .
26 X 10 rsTest AC A,ATG 10 PASS . . . . . . 0 0 NA00002 . . 0/1 .
27 X 10 rsTest AC A,ATG 10 PASS . . . . . . 0 0 NA00003 . . 0|2 .