diff test-data/vcf2tsv-test1.tab @ 0:8e1a693e7a52

Imported from capsule None
author anton
date Wed, 11 Jun 2014 17:11:55 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/vcf2tsv-test1.tab	Wed Jun 11 17:11:55 2014 -0400
@@ -0,0 +1,27 @@
+CHROM	POS	ID	REF	ALT	QUAL	FILTER	AA	AC	AF	AN	DP	NS	DB	H2	SAMPLE	DP	GQ	GT	HQ
+19	111	.	A	C	9.6	.	.	.	.	.	.	.	0	0	NA00001	.	.	0|0	10,10
+19	111	.	A	C	9.6	.	.	.	.	.	.	.	0	0	NA00002	.	.	0|0	10,10
+19	111	.	A	C	9.6	.	.	.	.	.	.	.	0	0	NA00003	.	.	0/1	3,3
+19	112	.	A	G	10	.	.	.	.	.	.	.	0	0	NA00001	.	.	0|0	10,10
+19	112	.	A	G	10	.	.	.	.	.	.	.	0	0	NA00002	.	.	0|0	10,10
+19	112	.	A	G	10	.	.	.	.	.	.	.	0	0	NA00003	.	.	0/1	3,3
+20	14370	rs6054257	G	A	29	PASS	.	.	0.5	.	14	3	1	1	NA00001	1	48	0|0	51,51
+20	14370	rs6054257	G	A	29	PASS	.	.	0.5	.	14	3	1	1	NA00002	8	48	1|0	51,51
+20	14370	rs6054257	G	A	29	PASS	.	.	0.5	.	14	3	1	1	NA00003	5	43	1/1	.,.
+20	17330	.	T	A	3	q10	.	.	0.017	.	11	3	0	0	NA00001	3	49	0|0	58,50
+20	17330	.	T	A	3	q10	.	.	0.017	.	11	3	0	0	NA00002	5	3	0|1	65,3
+20	17330	.	T	A	3	q10	.	.	0.017	.	11	3	0	0	NA00003	3	41	0/0	.,.
+20	1110696	rs6040355	A	G,T	67	PASS	T	.	0.333,0.667	.	10	2	1	0	NA00001	6	21	1|2	23,27
+20	1110696	rs6040355	A	G,T	67	PASS	T	.	0.333,0.667	.	10	2	1	0	NA00002	0	2	2|1	18,2
+20	1110696	rs6040355	A	G,T	67	PASS	T	.	0.333,0.667	.	10	2	1	0	NA00003	4	35	2/2	.,.
+20	1230237	.	T	.	47	PASS	T	.	.	.	13	3	0	0	NA00001	.	54	0|0	56,60
+20	1230237	.	T	.	47	PASS	T	.	.	.	13	3	0	0	NA00002	4	48	0|0	51,51
+20	1230237	.	T	.	47	PASS	T	.	.	.	13	3	0	0	NA00003	2	61	0/0	.,.
+20	1234567	microsat1	G	GA,GAC	50	PASS	G	3,1	.	6	9	3	0	0	NA00001	4	.	0/1	.
+20	1234567	microsat1	G	GA,GAC	50	PASS	G	3,1	.	6	9	3	0	0	NA00002	2	17	0/2	.
+20	1234567	microsat1	G	GA,GAC	50	PASS	G	3,1	.	6	9	3	0	0	NA00003	3	40	1/1	.
+20	1235237	.	T	.	0	.	.	.	.	.	.	.	0	0	NA00001	.	.	0/0	.
+20	1235237	.	T	.	0	.	.	.	.	.	.	.	0	0	NA00002	.	.	0|0	.
+X	10	rsTest	AC	A,ATG	10	PASS	.	.	.	.	.	.	0	0	NA00001	.	.	0	.
+X	10	rsTest	AC	A,ATG	10	PASS	.	.	.	.	.	.	0	0	NA00002	.	.	0/1	.
+X	10	rsTest	AC	A,ATG	10	PASS	.	.	.	.	.	.	0	0	NA00003	.	.	0|2	.