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comparison test-data/vcfaddinfo-test1.vcf @ 0:70eb7c0b6598

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Imported from capsule None
author anton
date Wed, 11 Jun 2014 17:10:42 -0400
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-1:000000000000 0:70eb7c0b6598
1 ##fileformat=VCFv4.0
2 ##fileDate=20090805
3 ##source=myImputationProgramV3.1
4 ##reference=1000GenomesPilot-NCBI36
5 ##phasing=partial
6 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
7 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
8 ##INFO=<ID=AC,Number=.,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
9 ##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency">
10 ##INFO=<ID=AA,Number=1,Type=String,Description="Ancestral Allele">
11 ##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP membership, build 129">
12 ##INFO=<ID=H2,Number=0,Type=Flag,Description="HapMap2 membership">
13 ##FILTER=<ID=q10,Description="Quality below 10">
14 ##FILTER=<ID=s50,Description="Less than 50% of samples have data">
15 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
16 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
17 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
18 ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality">
19 ##ALT=<ID=DEL:ME:ALU,Description="Deletion of ALU element">
20 ##ALT=<ID=CNV,Description="Copy number variable region">
21 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
22 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001 NA00002 NA00003
23 20 14370 rs6054257 G A 29 PASS AF=0.5;DP=14;NS=3;DB;H2 GT:GQ:HQ 0|0:48:51,51 1|0:48:51,51 1/1:43:.,.
24 20 17330 . T A 3 q10 AF=0.017;DP=11;NS=3 GT:GQ:HQ 0|0:49:58,50 0|1:3:65,3 0/0:41:.,.
25 X 10 rsTest AC A,ATG 10 PASS . GT 0 0/1 0|2