Mercurial > repos > anton > vcfaddinfo
view vcfaddinfo.xml @ 1:43b9838461a5
Updated to vcflib 86723982aa
author | Anton Nekrutenko <anton@bx.psu.edu> |
---|---|
date | Wed, 25 Jun 2014 16:00:29 -0400 |
parents | 70eb7c0b6598 |
children | 78f67ce56f34 |
line wrap: on
line source
<tool id="vcfaddinfo" name="VCFaddinfo:" version="0.0.1"> <requirements> <requirement type="package" version="86723982aa">vcflib</requirement> </requirements> <description>Adds info fields from the second dataset which are not present in the first dataset</description> <command>vcfaddinfo "${input1}" "${input2}" > "${out_file1}"</command> <inputs> <param format="vcf" name="input1" type="data" label="Add INFO fields to" help="First VCF dataset"/> <param format="vcf" name="input2" type="data" label="using INFO fields from" help="Second VCF dataset"/> </inputs> <outputs> <data format="vcf" name="out_file1" /> </outputs> <tests> <test> <param name="input1" value="vcfaddinfo-input1.vcf"/> <param name="input2" value="vcflib.vcf"/> <output name="out_file1" file="vcfaddinfo-test1.vcf" /> </test> </tests> <help> Adds info fields from the second dataset which are not present in the first dataset. ----- Vcfaddinfo is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib). </help> </tool>