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comparison vcfallelicprimitives.xml @ 1:e66cbd28cdfa

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Updated to vcflib 86723982aa
author Anton Nekrutenko <anton@bx.psu.edu>
date Wed, 25 Jun 2014 16:01:10 -0400
parents 239da20770dc
children 971da09d28aa
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0:239da20770dc 1:e66cbd28cdfa
1 <tool id="vcfallelicprimitives" name="VcfAllelicPrimitives:" version="0.0.1"> 1 <tool id="vcfallelicprimitives" name="VcfAllelicPrimitives:" version="0.0.1">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="586c5ae5d57a38dae6b32ea831fb1f7cfa14c9bd">vcflib</requirement> 3 <requirement type="package" version="86723982aa">vcflib</requirement>
4 </requirements> 4 </requirements>
5 <description>Split alleleic primitives (gaps or mismatches) into multiple VCF lines</description> 5 <description>Split alleleic primitives (gaps or mismatches) into multiple VCF lines</description>
6 <command>cat "${input}" | vcfallelicprimitives ${m_option} -t "${t_option}" > "${out_file1}"</command> 6 <command>cat "${input}" | vcfallelicprimitives ${m_option} -t "${t_option}" > "${out_file1}"</command>
7 <inputs> 7 <inputs>
8 <param format="vcf" name="input" type="data" label="Select VCF dataset"/> 8 <param format="vcf" name="input" type="data" label="Select VCF dataset"/>