Mercurial > repos > anton > vcfannotate

comparison vcfannotate.xml @ 1:044448c58323

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Updated to vcflib 86723982aa
author Anton Nekrutenko <anton@bx.psu.edu>
date Wed, 25 Jun 2014 16:01:27 -0400
parents 027fe0a0076e
children 98961914308d
comparison
equal deleted inserted replaced
0:027fe0a0076e 1:044448c58323
1 <tool id="vcfannotate" name="VCFannotate:" version="0.0.1"> 1 <tool id="vcfannotate" name="VCFannotate:" version="0.0.1">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="586c5ae5d57a38dae6b32ea831fb1f7cfa14c9bd">vcflib</requirement> 3 <requirement type="package" version="86723982aa">vcflib</requirement>
4 </requirements> 4 </requirements>
5 <description>Intersect VCF records with BED annotations</description> 5 <description>Intersect VCF records with BED annotations</description>
6 <command>vcfannotate --key "${key_option}" -b "${bed_data}" "${input}" > "${out_file1}"</command> 6 <command>vcfannotate --key "${key_option}" -b "${bed_data}" "${input}" > "${out_file1}"</command>
7 <inputs> 7 <inputs>
8 <param format="vcf" name="input" type="data" label="Select VCF dataset"/> 8 <param format="vcf" name="input" type="data" label="Select VCF dataset"/>