Mercurial > repos > anton > vcfannotate

changeset 3:28459b837ef8 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author anton
date Mon, 15 Sep 2014 14:48:28 -0400 (2014-09-15)
parents 98961914308d
children
files tool_dependencies.xml vcfannotate.xml
diffstat 2 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Jun 25 16:34:28 2014 -0400
+++ b/tool_dependencies.xml	Mon Sep 15 14:48:28 2014 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-  <package name="vcflib" version="86723982aa">
-      <repository changeset_revision="a6826babf644" name="vcflib_86723982aa" owner="anton" toolshed="https://toolshed.g2.bx.psu.edu" />
+    <package name="vcflib" version="8a5602bf07">
+        <repository changeset_revision="bffe0495cd92" name="package_vcflib_8a5602bf07" owner="anton" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>
--- a/vcfannotate.xml	Wed Jun 25 16:34:28 2014 -0400
+++ b/vcfannotate.xml	Mon Sep 15 14:48:28 2014 -0400
@@ -1,12 +1,12 @@
 <tool id="vcfannotate" name="VCFannotate:" version="0.0.2">
 <requirements>
-    <requirement type="package" version="86723982aa">vcflib</requirement>
+    <requirement type="package" version="8a5602bf07">vcflib</requirement>
 </requirements>
   <description>Intersect VCF records with BED annotations</description>
   <command>vcfannotate --key "${key_option}" -b "${bed_data}" "${input}" > "${out_file1}"</command>
   <inputs>        
     <param format="vcf" name="input" type="data" label="Select VCF dataset"/>
-    <param name="bed_data" type="data" format="bed" label="BED datasets to itersect with"/>
+    <param name="bed_data" type="data" format="bed" label="Select BED dataset to itersect with"/>
     <param name="key_option" size="20" type="text" value="BED-features" label="Intersecting VCF records will be prefixed with this TAG within the INFO field" help="--key option"/>
   </inputs>
   <outputs>
@@ -22,7 +22,7 @@
     </tests>
   <help>
 
-Intersect the records in the VCF file with targets provided in a BED file. Intersections are done on the reference sequences in the VCF file. 
+Intersect the records in the VCF file with intervals (features) provided in a BED file. Intersections are done on the reference sequences in the VCF file. 
 
 -----