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comparison vcfbedintersect.xml @ 3:ec708a4031cc draft default tip

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author anton
date Mon, 15 Sep 2014 14:49:12 -0400
parents 861438b972d9
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2:861438b972d9 3:ec708a4031cc
1 <tool id="vcfbedintersect" name="VCF-BEDintersect:" version="0.0.2"> 1 <tool id="vcfbedintersect" name="VCF-BEDintersect:" version="0.0.2">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="86723982aa">vcflib</requirement> 3 <requirement type="package" version="8a5602bf07">vcflib</requirement>
4 <!-- <requirement type="package" version="0.1.18">samtools</requirement> --> 4 <!-- <requirement type="package" version="0.1.18">samtools</requirement> -->
5 </requirements> 5 </requirements>
6 <description>Intersect VCF and BED datasets</description> 6 <description>Intersect VCF and BED datasets</description>
7 <command> 7 <command>
8 #if str($bed_vs_interval.bed_vs_interval_selector) == "bed": 8 #if str($bed_vs_interval.bed_vs_interval_selector) == "bed":
14 </command> 14 </command>
15 <inputs> 15 <inputs>
16 <!-- selecting refernce source --> 16 <!-- selecting refernce source -->
17 <param name="vcf_input" type="data" format="vcf" label="Select VCF dataset" /> 17 <param name="vcf_input" type="data" format="vcf" label="Select VCF dataset" />
18 <conditional name="bed_vs_interval"> 18 <conditional name="bed_vs_interval">
19 <param name="bed_vs_interval_selector" type="select" label="Intersect with BED dataset or an interval"> 19 <param name="bed_vs_interval_selector" type="select" label="BED dataset or an interval to intersect with">
20 <option value="bed">BED</option> 20 <option value="bed">BED</option>
21 <option value="interval">Interval</option> 21 <option value="interval">Interval</option>
22 </param> 22 </param>
23 <when value="bed"> 23 <when value="bed">
24 <param name="bed_input" type="data" format="bed" label="Select BED dataset" /> 24 <param name="bed_input" type="data" format="bed" label="Select BED dataset" />