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comparison vcfcombine.xml @ 3:80a0553ee39a draft default tip

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author anton
date Mon, 15 Sep 2014 14:50:09 -0400
parents e00ef554b109
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2:e00ef554b109 3:80a0553ee39a
1 <tool id="vcfcombine" name="VCFcombine:" version="0.0.2"> 1 <tool id="vcfcombine" name="VCFcombine:" version="0.0.2">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="86723982aa">vcflib</requirement> 3 <requirement type="package" version="8a5602bf07">vcflib</requirement>
4 </requirements> 4 </requirements>
5 <description>Combine multiple VCF datasets</description> 5 <description>Combine multiple VCF datasets</description>
6 <command> 6 <command>
7 7
8 vcfcombine 8 vcfcombine
28 <output name="out_file1" file="vcfcombine-test1.vcf"/> 28 <output name="out_file1" file="vcfcombine-test1.vcf"/>
29 </test> 29 </test>
30 </tests> 30 </tests>
31 <help> 31 <help>
32 32
33 Combines VCF files positionally, combining samples when sites and alleles are identical. Any number of VCF files may be combined. The INFO field and other columns are taken from one of the files which are combined when records in multiple files match. Alleles must have identical ordering to be combined into one record. If they do not, multiple records will be emitted. 33 Combines VCF files positionally, combining samples when sites and alleles are identical. Any number of VCF files may be combined. The INFO field and other columns are taken from one of the files, which are combined when records in multiple files match. Alleles must have identical ordering to be combined into one record. If they do not, multiple records will be emitted.
34 34
35 ----- 35 -----
36 36
37 Vcfcombine is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib). 37 Vcfcombine is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).
38 38